Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1416 174 4e-38 seq999 152 1e-31 seq986 145 2e-29 seq1169 136 1e-26 >seq1416 Length=13108 Score = 174 bits (192), Expect = 4e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| || || || |||||||| |||||||| ||| ||| Sbjct 8513 CAAATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCTCCGAC 8454 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| ||||||||||| || ||||||||| Sbjct 8453 ACGATCGAAAACGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCAGCAA 8394 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| ||||| || ||||| || | || || |||| || ||| || Sbjct 8393 CGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGCCGCACCCTCTCCGACTACAACATC 8334 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 8333 CAGAAGGAATCCACCCTCCATCTCGT 8308 Score = 154 bits (170), Expect = 4e-32 Identities = 161/213 (76%), Gaps = 7/213 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGA-------TCACCCTCGAGGTGGAAAG 177976 ||||| ||||| ||||| ||||| ||||||| ||||||| ||||| ||| Sbjct 8748 CAAATCTTCGTCAAAACGCTCACGGGAAAAANNNNNNNNNNTCACCCTGGAGGTCGAATC 8689 Query 177977 CTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036 || |||||||||||||| || || ||||| |||||||| || || ||||| || || Sbjct 8688 GTCGGACACCATCGAGAATGTGAAGACGAAGATCCAGGACAAGGAGGGTATCCCGCCCGA 8629 Query 178037 CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||||||||| || ||||||||||| ||||| ||||| || || | ||||| |||| || Sbjct 8628 CCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCCGACTA 8569 Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||||| ||||| || || || || || Sbjct 8568 CAACATCCAAAAGGAATCCACCCTTCACCTCGT 8536 Score = 140 bits (154), Expect = 8e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| ||| | || || || || ||||| |||||||| ||| || ||| Sbjct 9443 CAAATCTTTGTGAAGACTTTGACCGGCAAGACCATCACGCTCGAGGTCGAATCTTCCGAC 9384 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| |||||||||||||| ||||| || || || ||||||||| Sbjct 9383 ACGATCGAGAACGTCAAAACCAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAA 9324 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || ||||||||||| || ||||| || || || Sbjct 9323 CGTCTCATCTTCGCCGGGAAGCAGCTTGAGGACGG 9289 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || || |||||||| ||||| ||||| ||| ||| Sbjct 8285 CAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAGTCCTCCGAC 8226 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| ||||| || ||||| || || || || || || |||||| Sbjct 8225 ACTATCGAGAACGTCAAAACGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAGCAA 8166 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | || ||||| | || || |||| || ||| | Sbjct 8165 CGTCTCATCTTTGCGGGGAAGCAGTTGGAGGATGGTCGTACGCTCTCCGACTACAACATT 8106 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 8105 CAGAAGGAGTCGACCCTCCACCTCGT 8080 Score = 131 bits (144), Expect = 4e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || || ||||| | ||||| || || ||| Sbjct 9066 CAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTCCGAC 9007 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 9006 ACCATCGAGAATGTCAAGACCAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAGCAA 8947 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || ||||||||||| || |||||||| || || Sbjct 8946 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGG 8912 >seq999 Length=50871 Score = 152 bits (168), Expect = 1e-31 Identities = 160/207 (77%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| ||||| || ||| || ||| |||| | ||| ||| Sbjct 18152 CAAATCTTCGTCAAAACGCTCACGGGAAAGACAATC---CTTGAGATGGAGACCTCCGAC 18096 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||| ||||| || || ||| || ||| |||||||||| || || || |||||||| Sbjct 18095 ACGATCGAAAACGTGAAGACGAAA-ATCCAGAACAAAGAAGGCATTCCCCCTGACCAGCA 18037 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||| || ||||||||||| ||||| ||||| || | | ||||| |||| || ||| | Sbjct 18036 ACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGACCGCACTCTCTCCGACTACAACAT 17977 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 |||||| ||||| || || || || || Sbjct 17976 CCAAAAGGAATCCACCCTTCACCTCGT 17950 Score = 136 bits (150), Expect = 1e-26 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || || ||||| | ||||| || || ||| Sbjct 19500 CAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTCCGAC 19441 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| |||||||||||||| || || |||||||| ||||||||| Sbjct 19440 ACCATCGAGAATGTCAAGACCAAGATTCAGGACAACGAGGGTATCCCTCCCGACCAGCAA 19381 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || ||||||||||| || |||||||| || || Sbjct 19380 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGG 19346 Score = 105 bits (116), Expect = 2e-17 Identities = 118/157 (75%), Gaps = 7/157 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| |||||||| ||||| |||||||| |||| ||| || ||| Sbjct 19194 CAAATCTTCGTCAAAACGCTCACAGGGAAAACTATCACCCTGGAGGCCGAATCGTCGGAC 19135 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA---- 178039 ||||||||||| || || ||||| |||| ||| || || ||||| || ||||| Sbjct 19134 ACCATCGAGAATGTGAAGACGAAGATCCAGGGCAAGGAGGGTATCCCGCCCGACCAACGT 19075 Query 178040 -GCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 | || || |||||||||| ||||| ||||| || Sbjct 19074 TTCCACAAC--GTCTTCGCCGGCAAACAACTCGAGGA 19040 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 12/208 (6%) Strand=Plus/Minus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 || |||| |||| ||||| |||| | |||||||| ||||| ||| || ||||||| Sbjct 18388 TTCTCGTCGAAACCCTCACGCAAAAAGCTATCACCCTGGAGGTCGAATCGTCGGACACCA 18329 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC-CTCCG--------GACC 178038 ||||||| || || ||||| |||||||| || || |||| |||| || Sbjct 18328 TCGAGAATGTGAAGACGAAGATCCAGGACAAGGAGGGTATCCTGTCCGACCCGCGTTTCC 18269 Query 178039 AGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATA 178098 |||||| || ||||||||||| ||||| ||| || || | ||||| |||| || | Sbjct 18268 TGCAACGTCTCATCTTCGCCGGCAAACAACTC---GAGGGCCGCACTCTCTCCGACTACA 18212 Query 178099 ACGTCCAAAAAGAATCAACACTGCATCT 178126 || ||| ||| ||||| || || || || Sbjct 18211 ACATCCCAAAGGAATCCACCCTTCACCT 18184 >seq986 Length=59218 Score = 145 bits (160), Expect = 2e-29 Identities = 125/155 (81%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || ||||||||||||||||| || ||| Sbjct 6175 CAAATCTTCGTTAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 6234 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| |||||||| || || |||||||| Sbjct 6235 ACCATTGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAGCAG 6294 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || |||||||||||||| || |||||||| || || Sbjct 6295 CGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGG 6329 >seq1169 Length=14909 Score = 136 bits (150), Expect = 1e-26 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| || || || |||||||| |||||||| || ||| Sbjct 5548 CAAATCTTCGTCAAAACGCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCGTCCGAC 5607 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||||||| ||||| || ||||| || || || || || ||||||||| Sbjct 5608 ACCATCGAGAACGTCAAAACGAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAA 5667 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | || ||||||||| | || |||||||| || || Sbjct 5668 CATCTCATCTTCGCCAGCAAGCAGCTCGAGGACGG 5702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203701680749316