Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1416 125 7e-24 seq986 114 1e-20 seq999 100 3e-16 seq1169 96.9 3e-15 >seq1416 Length=13108 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| |||||||| ||||| ||||||||| Sbjct 8290 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 8349 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || || ||||||||||| || || || || ||||| | ||| Sbjct 8350 AGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGG 8409 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || |||| ||| | | |||||| |||||||| Sbjct 8410 ATTCCTTCCTTGTCCTGGATCTTCGTCTTC-ACGTTTTCGATCGTGTCGGAGGACTCCAC 8468 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || ||||| || || || ||||| || ||||| Sbjct 8469 CTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 107 bits (118), Expect = 2e-18 Identities = 163/234 (70%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || || || || ||| ||||| || ||||| ||||||||| Sbjct 8518 CCGCCGCGAAGACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAG 8577 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| || ||||||||||| || || || || ||||| | || Sbjct 8578 AGAGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGG 8637 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | ||||| ||| || ||| Sbjct 8638 ATACCCTCCTTGTCCTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACC 8697 Query 41816 TCCACCGTTA-------TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || | |||| ||||| ||||| || ||||| || ||||| Sbjct 8698 TCCAGGGTGANNNNNNNNNNTTTTTCCCGTGAGCGTTTTGACGAAGATTTGCAT 8751 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||||||||||||| ||||||||| Sbjct 8062 CCACCACGGAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 8121 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||| || || || || || || || || || | |||| Sbjct 8122 AGCGTACGACCATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGA 8181 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || | || | || ||| | | ||||||| |||||||| Sbjct 8182 ATACCCTCCTTGT-CTTGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCAC 8240 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || ||||| || || || || ||||| || || || ||||| Sbjct 8241 TTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 ||||| |||| |||||||||||||||||||| || || || || ||||| | || | Sbjct 8906 GTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATA 8965 Query 41759 CTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTC 41817 | |||||||||| ||| | || | ||| | | | |||||| ||||| ||||| Sbjct 8966 CCCTCCTTGTCC-TGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTC 9024 Query 41818 CACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||| || || || || || || ||||| ||||| || ||||| Sbjct 9025 CAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 >seq986 Length=59218 Score = 114 bits (126), Expect = 1e-20 Identities = 130/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||||||||| |||| |||||||||||||||||||| || || ||||| ||||| | | Sbjct 6341 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGG 6282 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 |||| | ||||||||| ||| | || | | ||| | | | |||||| ||||| Sbjct 6281 GGAATTCCTTCCTTGTCC-TGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTC 6223 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| | || || || || ||||| || ||||| ||||| || |||||| Sbjct 6222 CACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCATG 6171 >seq999 Length=50871 Score = 100 bits (110), Expect = 3e-16 Identities = 161/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || | ||| | || || || || ||| ||||| || ||||| ||||||||| Sbjct 17932 CCACCACGGAAACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAG 17991 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| ||||| ||||| || ||||||||||| || || || || ||||| | |||| Sbjct 17992 AGAGTGCGGTCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGA 18051 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||| | |||||| |||| ||| | | |||||| | ||||| Sbjct 18052 ATGCCTTCTTTGTTCTGGATTTTCGTCTTC-ACGTTTTCGATCGTGTCGGAGGTCTCCAT 18110 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||| ||||| || ||||| || || || Sbjct 18111 CTCAA---GGATTGTCTTTCCCGTGAGCGTTTTGACGAAGATTTGTAT 18155 >seq1169 Length=14909 Score = 96.9 bits (106), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 41698 GGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAAC 41757 |||||| |||| ||||||||||||| |||||| || || | || ||||| | ||||| Sbjct 5709 GGTGCGACCGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAAT 5650 Query 41758 GCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCT 41816 || |||||||| | || | || | || ||| | | |||||| ||||||||||| Sbjct 5649 GCCCTCCTTGT-CTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCT 5591 Query 41817 CCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | | || || || || ||||| ||||| || ||||| || |||||| Sbjct 5590 CAAGGGTGATTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCATG 5544 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || ||||| || ||| ||||| || ||||| |||||||| Sbjct 5544 GCCGCCGCGAAGACGGAGGACGAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGA 5485 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCG 41739 ||| ||||| |||| ||||| || ||||||||||| || || || Sbjct 5484 GAGAGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACG 5440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292939376800