Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3792 123 3e-23 seq2503 93.3 4e-14 >seq3792 Length=31585 Score = 123 bits (136), Expect = 3e-23 Identities = 294/436 (67%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 || |||||| ||| || ||||| || ||||| || || || | | || || | ||| Sbjct 6537 TGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTGCAGTGAAATCATGTCC 6596 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAAC--TA 16031 ||||| ||||| ||||| || || | | || ||| | |||| || | ||| || Sbjct 6597 ATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGC---AACCATA 6653 Query 16032 AT-CTATCTGCTACAAATTCTATATATTGACACATTAA-GTCGCAATTAATTCCTATAAG 16089 | | ||| || |||||||| || ||||||||||| || || | |||| || || || | Sbjct 6654 AGACGATCAGCAACAAATTCAATGTATTGACACATCAAAGTAG-AATTCATACCAATCAA 6712 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 | || || | || | ||||| |||| ||||| || | || ||||| | || || Sbjct 6713 TGCAACAGGTAATGCATCAGTTAAGAATTCCTGTTCAATACCTACAGCTTCCATTATAAT 6772 Query 16150 ATCGGTGGCTCGT-GTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGA 16208 ||| | | ||| ||| | | ||| | | ||| |||||| ||||| || | Sbjct 6773 ATCCTTCACACGTTGTTGGCTAGGTTGTTTACGA-ATGTGAGTAAACAAAAGACAAGCAA 6831 Query 16209 AGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCA 16268 | || ||| || |||||||| | | || | ||| || |||||| || || |||| Sbjct 6832 AATCCGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCA 6891 Query 16269 TTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCT 16328 | || |||||||| | ||| || || | |||||||| || |||||||||||||| | Sbjct 6892 TCAAACCACGTTTCTTAAGCCAAAAGATAGAGGCAAATGAGCCAGAAAAGAATATACCTT 6951 Query 16329 CAACAGATGCAAAAGC 16344 | || | |||||||| Sbjct 6952 CTACTGCAGCAAAAGC 6967 >seq2503 Length=34491 Score = 93.3 bits (102), Expect = 4e-14 Identities = 297/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 ||| |||||| ||| || ||||| || ||||| || || || | | || || | || Sbjct 6832 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 6891 Query 15973 CATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 |||||| || || || |||| || || |||| | | | | || || | | Sbjct 6892 CATAAAGTCGAATGGGTTAGAGGCATTGTAAATCTTGTCAA--AGCCAAGGGCGACCATG 6949 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAG-TCGCAATTAATTCCTATAAG 16089 | | ||| || || ||||| || || |||||||| ||| | || || || || || | Sbjct 6950 AGACGATCAGCGACGAATTCAATGTACTGACACATCAAGGTAGCG-TTCATACCGATCAA 7008 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 | || || ||||| | | | |||| |||||| || | || |||||| ||| || Sbjct 7009 TGCCACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACTGCTTCTACAATAAT 7068 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGG---TGTTTAAACATTAGACACGC 16206 || || | ||| || ||| | || || || || || | |||| ||||| || Sbjct 7069 GTCCTTGACGCGTTGTT--GACTGGGT-TGTTTGCGGATGTGGGTGAACAAGAGACAGGC 7125 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 || ||| || || |||||||| | | ||| | ||| || || || || || || Sbjct 7126 AAAATCGGTGTGAAGACCTTCGTCACGACAGATCAATTCATTACTGAACGTCAAACCGGG 7185 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| || |||||||||||||| || || | || ||||| || |||||||| || || Sbjct 7186 CATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAACCGGAAAAGAAGATGCC 7245 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGC 16359 || |||| ||||| |||| | ||||| || Sbjct 7246 TTCGACAGCGGCAAAGGCGACCAGACGTTCAGC 7278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511389334301720