Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3880 120 2e-22 seq2672 102 7e-17 seq3785 91.5 1e-13 seq3812 87.8 1e-12 seq2895 87.8 1e-12 seq3789 86.0 5e-12 >seq3880 Length=130811 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||||||| |||| || | || |||||||| || || ||| ||| | | Sbjct 118626 ATGCAAATATTCGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 118685 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| || ||||||||| | || ||||||| Sbjct 118686 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 118745 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||||||||||||||| ||||||||| | |||||| || | | || | |||||| | Sbjct 118746 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAG--CGATTATA 118803 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| ||||||||||| || || || |||| ||||| ||| |||| || Sbjct 118804 ATATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGG 118852 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 |||||||| ||| ||||| ||||| | || ||||||||| | || || ||||| Sbjct 118476 AAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCTGATCAACAACGTCTCATTTTTGCT 118535 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 ||||||||||| || ||| ||| | || || ||||||||||||||||| ||| Sbjct 118536 GGCAAACAATTAGAGGATGGTCGTACTCTCAGTGACTATAATATTCAAAAGGAATCAACT 118595 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| | ||| || |||||||||| || Sbjct 118596 CTTCATTTAGTGCTAAGATTACGAGGTGG 118624 >seq2672 Length=76086 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 |||||||| || |||||||||||| | || |||||||||| | || |||||||| Sbjct 17992 AAGCAAAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAACAACGTCTCATCTTTGCA 17933 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 |||||||||||||||||| | || | || || ||||||||||| ||||| || Sbjct 17932 GGCAAACAATTGGAAGATGGCCGTACCCTTAGTGACTATAATATTCAAAAAGAATCAACC 17873 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||| || || ||||||| || Sbjct 17872 CTTCATCTGGTACTAAGACTACGAGGTGG 17844 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||| |||||| | || |||||| |||||||| || ||||| || ||| Sbjct 17758 AAAATTCAAGATAAGGAAGGTATCCCACCAGATCAGCAAAGACTAATTTTTGCTGGTAAA 17699 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | |||||| ||| | ||||||||||| ||||| ||||| || ||||| Sbjct 17698 CAACTTGAAGATGGTCGTACTTTAAGTGATTACAATATACAAAAAGAATCAACGCTTCAT 17639 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 |||| ||||| ||| |||| || Sbjct 17638 TTGGTATTACGTTTAAGAGGTGG 17616 >seq3785 Length=127354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || |||||| | ||||||||||| || || |||||||||||| ||| || |||| Sbjct 87409 GACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTGAGCGAT 87350 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| |||||||||||||| ||||||||| |||| Sbjct 87349 TACAACATTCAAAAGGAATCCACTCTTCACTTGGT 87315 >seq3812 Length=235963 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 25136 AGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAA 25195 |||| | ||| || |||||| | ||||||||||| || || |||||||||||| Sbjct 210925 AGGTATCCCCCCTGACCAACAACGTCTTATCTTTGCCGGTAAGCAATTGGAAGATGGTCG 210984 Query 25196 AACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| || ||| ||||| |||||||||||||| ||||||||| |||| Sbjct 210985 CACTTTGAGCGACTACAACATTCAAAAGGAATCCACTCTTCACTTGGT 211032 >seq2895 Length=151278 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167 || |||||||||| ||| || || |||||| | || ||||||||| | || || | Sbjct 146048 ATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAACGTCTCATTT 145989 Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227 | || || ||||||||||||||| || || || ||||| ||||||||||||| Sbjct 145988 TCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGAGTGACTACAACATTCAAAAGGAAT 145929 Query 25228 CTACTCTTCACATGGT 25243 | ||||||||| |||| Sbjct 145928 CCACTCTTCACTTGGT 145913 >seq3789 Length=135228 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 ||||||||||| || | |||||| | || ||||| || || || || ||| || Sbjct 104403 AAAATGCAAATCTTTGTTAAAACACTTACTGGCAAGACAATCACTTTGGAGGTCGAATCC 104462 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || | | | || ||||||||||||| || || |||||| | || ||| Sbjct 104463 TCTGATAGTATTGAGAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTGAT 104522 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | | |||||||| || || || | |||||| | ||| || || ||| Sbjct 104523 CAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACTTTGAGTGACTAC 104582 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGT 25243 || |||||||||||||| ||||| ||| |||| Sbjct 104583 AACATTCAAAAGGAATCCACTCTCCACTTGGT 104614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410777169176294