Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq636 105 8e-18 seq2288 104 3e-17 seq547 104 3e-17 seq3247 102 9e-17 seq3789 98.7 1e-15 seq2672 96.9 4e-15 seq1996 96.9 4e-15 seq1978 96.9 4e-15 seq3100 95.1 1e-14 seq3075 95.1 1e-14 seq1971 95.1 1e-14 seq737 95.1 1e-14 seq691 93.3 5e-14 seq3880 89.7 6e-13 >seq636 Length=685 Score = 105 bits (116), Expect = 8e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| | ||||| ||| |||||| |||||| ||||||||||||||||||||| ||| Sbjct 462 GAAAAAATCTCTCC--GGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 519 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 ||||||||||||||||||| ||||| Sbjct 520 CTCACCACTATACTACCGAAGATTG 544 >seq2288 Length=1986 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||| | |||||| |||| |||||| |||||| ||||||||||||||||||||| | Sbjct 429 ATCAAACAATTTCTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 488 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| ||| Sbjct 489 TACTCACCACTATACTACCGAAGAT 513 >seq547 Length=2492 Score = 104 bits (114), Expect = 3e-17 Identities = 72/81 (89%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| ||| |||||| |||||| ||||||||||||||||||||| |||| Sbjct 479 AAAAATTCTCTCC--GGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 422 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||||||| || Sbjct 421 TCACCACTATACTACCGAAGA 401 >seq3247 Length=733 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| |||||| |||||| ||||||||||||||||||||| |||| Sbjct 229 AAAAACATTCTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 170 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||||||| || Sbjct 169 TCACCACTATACTACCGAAGA 149 >seq3789 Length=135228 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||||||||||| ||||| ||| || ||| || | || || Sbjct 104614 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCA 104555 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||||||||| || || | || || || || | || | | |||||||| | Sbjct 104554 AGCTGCTTACCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGG 104495 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 |||||||| |||| || | | | || ||||| || || | ||||| || ||| Sbjct 104494 ATTTTTTGCTTGACATTCTCAATACTATCAGAGGATTCGACCTCCAAAGTGATTGTCTTG 104435 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || || || || ||||||||||||||||| Sbjct 104434 CCAGTAAGTGTTTTAACAAAGATTTGCATTTT 104403 >seq2672 Length=76086 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||||||||| || |||||||| | || || ||||| |||||||||||| Sbjct 17615 TCCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCACT 17674 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 | ||| || | || || || || |||||||| || || |||| ||||| || | || Sbjct 17675 TAAAGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGCTGATCTGGTGG 17734 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| || ||||| ||| | | | | || ||| ||||| || Sbjct 17735 GATACCTTCCTTATCTTGAATTTTGCTTTTCACATTATCAATAGTATCGGAGGATTCAAC 17794 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || ||||| || || ||||| |||||||||||||| Sbjct 17795 TTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTAACAAAGATTTGCAT 17842 >seq1996 Length=4092 Score = 96.9 bits (106), Expect = 4e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 3318 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 3377 Query 60131 CCGAGGAT 60138 |||| ||| Sbjct 3378 CCGAAGAT 3385 >seq1978 Length=1053 Score = 96.9 bits (106), Expect = 4e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 492 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 551 Query 60131 CCGAGGAT 60138 |||| ||| Sbjct 552 CCGAAGAT 559 >seq3100 Length=5352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 4847 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 4906 Query 60131 CCGAGGA 60137 |||| || Sbjct 4907 CCGAAGA 4913 >seq3075 Length=4197 Score = 95.1 bits (104), Expect = 1e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 1877 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 1936 Query 60131 CCGAGGA 60137 |||| || Sbjct 1937 CCGAAGA 1943 >seq1971 Length=1319 Score = 95.1 bits (104), Expect = 1e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 629 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 688 Query 60131 CCGAGGA 60137 |||| || Sbjct 689 CCGAAGA 695 >seq737 Length=1285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 925 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 866 Query 60131 CCGAGGA 60137 |||| || Sbjct 865 CCGAAGA 859 >seq691 Length=893 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 517 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTA 458 Query 60131 CCGAGGATT 60139 |||| |||| Sbjct 457 CCGAAGATT 449 >seq3880 Length=130811 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 130141 CGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTA 130200 Query 60131 CCGAGGA 60137 |||| || Sbjct 130201 CCGAAGA 130207 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/234 (68%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||||| ||| ||||||||||| || |||||||| | ||| |||||||| ||||| || Sbjct 118858 CTATT-TCCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATA 118800 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||| | || || | || ||||| || || ||||| || || |||| || || || Sbjct 118799 ATCGCTTAATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATC 118740 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129 | || | | || ||||| ||||| ||| | | | | || ||| || Sbjct 118739 TGGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGA 118680 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || | ||||| |||||||| || || ||||| || || |||||||| Sbjct 118679 TTCAACTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACGAATATTTGCAT 118626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571789573789880