Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3880 120 5e-22 seq2672 114 2e-20 seq2543 95.1 2e-14 seq175 95.1 2e-14 >seq3880 Length=130811 Score = 120 bits (132), Expect = 5e-22 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | |||||||||||| | || ||||| || |||||||||||| Sbjct 118854 TTCCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCGC 118795 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || | | ||| |||| |||||| |||||||| || | |||||| ||||| || | Sbjct 118794 TTAATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTG 118735 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||| ||||| ||||| ||| ||| | Sbjct 118734 GAATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTCAA 118675 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| |||||||||||| ||||| | || || | |||||||||||| Sbjct 118674 CTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACGAATATTTGCAT 118626 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||||| | ||||| || ||||| | ||| ||||| ||| || |||||||| || Sbjct 118624 CCACCTCGTAATCTTAGCACTAAATGAAGAGTTGATTCCTTTTGA-ATATTATAGTCACT 118566 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| ||||||||||| ||||||||||| | | ||| ||||| ||||| Sbjct 118565 GAGAGTACGACCATCCTCTAATTGTTTGCCAGCAAAAATGAGACGTTGTTGATCAGGAGG 118506 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 118505 AATGCCTTCCTTATCTTG 118488 >seq2672 Length=76086 Score = 114 bits (126), Expect = 2e-20 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | |||||||||||| | || |||||||| |||||| ||||| Sbjct 17614 TTCCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCAC 17673 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | | ||| || | |||||| ||||||||||| | |||||||||||| || | Sbjct 17674 TTAAAGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGCTGATCTGGTG 17733 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || ||||| |||||||| |||||| || ||| | Sbjct 17734 GGATACCTTCCTTATCTTGAATTTTGCTTTTCACATTATCAATAGTATCGGAGGATTCAA 17793 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| ||||||||| || ||||| | || |||| || |||||||| Sbjct 17794 CTTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTAACAAAGATTTGCAT 17842 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| ||||||| ||||| ||| | || |||||||| |||||||| || | Sbjct 17844 CCACCTCGTAGTCTTAGTACCAGATGAAGGGTTGATTCTTTTTGAATATTATAGTCACTA 17903 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || |||||||| || ||||| || | | ||| ||||| || || Sbjct 17904 AGGGTACGGCCATCTTCCAATTGTTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGG 17963 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 17964 ATACCTTCTTTATCTTG 17980 >seq2543 Length=10996 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | ||| |||||||| ||||| || |||||| Sbjct 1470 CCACCACGAAGACGAAGGACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1411 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| ||||||||||| ||||||||||| | | || || || ||||| Sbjct 1410 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGG 1351 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 1350 ATGCCTTCCTTGTCTTG 1334 >seq175 Length=1843 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | ||| |||||||| ||||| || |||||| Sbjct 1242 CCACCACGAAGACGAAGGACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1183 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| ||||||||||| ||||||||||| | | || || || ||||| Sbjct 1182 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGG 1123 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 1122 ATGCCTTCCTTGTCTTG 1106 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | ||| |||||||| ||||| || |||||| Sbjct 1698 CCACCACGAAGACGAAGGACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1639 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| ||||||||||| ||||||||||| | | || || || ||||| Sbjct 1638 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGG 1579 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 1578 ATGCCTTCCTTGTCTTG 1562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743489957912320