Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2543 120 2e-22 seq175 120 2e-22 seq3789 104 2e-17 seq3850 102 6e-17 seq2895 98.7 8e-16 >seq2543 Length=10996 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTT-GGCGATCGTCG 45184 |||||||| || ||| || || |||||||||||||| ||| || ||| ||| ||| Sbjct 996 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 937 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| || || || ||||| || ||||| |||||||| | ||| |||||||| Sbjct 936 ---AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCT 880 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| |||||||| || | | | ||| || | || || || | || || ||| Sbjct 879 TGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGATTCGACTTCTAAAGTGATAGTC 820 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| ||||||||||||||| Sbjct 819 TTTCCGGTAAGAGTCTTTACAAAGATTTGCATG 787 Score = 113 bits (124), Expect = 4e-20 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC--AGT-TGGCGATCGTCG 45184 |||||||| || ||| || || |||||||||||||| || ||| ||| ||| ||| Sbjct 1680 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1621 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| || || || ||||| || ||||| |||||||| | ||| |||||||| Sbjct 1620 ---AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCT 1564 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| |||||||| || | | | ||| || | ||| ||||||| || || ||| Sbjct 1563 TGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACCTCCAAAGTGATAGTC 1504 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || || || |||||||| Sbjct 1503 TTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 1472 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC--AGT-TGGCGATCGTCG 45184 |||||||| || ||| || || |||||||||||||| || ||| ||| ||| ||| Sbjct 1224 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1165 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| || || || ||||| || ||||| |||||||| | ||| |||||||| Sbjct 1164 ---AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCT 1108 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| |||||||| || | | || || | ||| || |||| |||||| || Sbjct 1107 TGAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTT 1048 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || || || ||||| Sbjct 1047 TTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1016 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC--AGT-TGGCGATCGTCG 45184 |||||||| || ||| || || |||||||||||||| || ||| ||| ||| ||| Sbjct 1908 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1849 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| || || || ||||| || ||||| |||||||| | ||| |||||||| Sbjct 1848 ---AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCT 1792 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| |||||||| || | | || || | ||| || |||| |||||| || Sbjct 1791 TGAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTT 1732 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || || || ||||| Sbjct 1731 TTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1700 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC--AGT-TGGCGATCGTCG 45184 |||||||| || ||| || || |||||||||||||| || ||| ||| ||| ||| Sbjct 2136 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 2077 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| || || || ||||| || ||||| |||||||| | ||| |||||||| Sbjct 2076 ---AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCT 2020 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| |||||||| || | | || || | ||| || |||| |||||| || Sbjct 2019 TGAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTT 1960 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || || || ||||| Sbjct 1959 TTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1928 >seq175 Length=1843 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTT-GGCGATCGTCG 45184 |||||||| || ||| || || |||||||||||||| ||| || ||| ||| ||| Sbjct 996 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 937 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| || || || ||||| || ||||| |||||||| | ||| |||||||| Sbjct 936 ---AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCT 880 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| |||||||| || | | | ||| || | || || || | || || ||| Sbjct 879 TGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGATTCGACTTCTAAAGTGATAGTC 820 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| ||||||||||||||| Sbjct 819 TTTCCGGTAAGAGTCTTTACAAAGATTTGCATG 787 Score = 113 bits (124), Expect = 4e-20 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC--AGT-TGGCGATCGTCG 45184 |||||||| || ||| || || |||||||||||||| || ||| ||| ||| ||| Sbjct 1452 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1393 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| || || || ||||| || ||||| |||||||| | ||| |||||||| Sbjct 1392 ---AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCT 1336 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| |||||||| || | | | ||| || | ||| ||||||| || || ||| Sbjct 1335 TGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACCTCCAAAGTGATAGTC 1276 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || || || |||||||| Sbjct 1275 TTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 1244 >seq3789 Length=135228 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||| |||||||||||||| ||| || | || || Sbjct 104614 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCA 104555 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||| || ||||| || ||||| | ||| |||||||| Sbjct 104554 AGCTGCTTACCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGG 104495 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||||||||| || | | | || || || ||||||| || || |||||| Sbjct 104494 ATTTTTTGCTTGACATTCTCAATACTATCAGAGGATTCGACCTCCAAAGTGATTGTCTTG 104435 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || || || || |||||||||||||| || Sbjct 104434 CCAGTAAGTGTTTTAACAAAGATTTGCATTTT 104403 >seq3850 Length=152326 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||| ||||||||||||||| ||| ||| |||| || Sbjct 95267 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTACGACCGTCTTCT 95326 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| |||||||| || | || |||||||| ||||| | ||| |||||||| | Sbjct 95327 AATTGTTTACCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGA 95386 Query 45248 ATTTTTTGCTTAAC 45261 || |||||||| || Sbjct 95387 ATCTTTTGCTTGAC 95400 >seq2895 Length=151278 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||| |||||||||||||| ||| |||| | || ||| Sbjct 145913 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCACTCAAGGTGCGACCATCTTCC 145972 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| |||||||| || | || ||||| || ||||| | ||| |||||||| | Sbjct 145973 AATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 146032 Query 45248 ATTTTTTGCTTAAC 45261 || |||||||| || Sbjct 146033 ATCTTTTGCTTGAC 146046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395056320467341