Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3792 185 8e-42 seq2503 95.1 1e-14 >seq3792 Length=31585 Score = 185 bits (204), Expect = 8e-42 Identities = 303/434 (70%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| ||| ||| | |||||||| ||||| || || |||| |||||| || | ||| Sbjct 6537 TGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTGCAGTGAAATCATGTCC 6596 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 ||||| ||||| ||||| |||| |||| | | |||||| | || || | | | | Sbjct 6597 ATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCATAAGA 6656 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 | ||| |||| || ||||| |||||| |||| ||| | |||||||||| || | | Sbjct 6657 CGATCAGCAACAAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGCA 6716 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 ||||| | | || ||||| ||||| | ||| ||| ||||| || |||||||| | Sbjct 6717 ACAGGTAATGCATCAGTTAAGAATTCCTGTTCAATACCTACAGCTTCCATTATAATATCC 6776 Query 14156 GTAATAATTTCATTAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAA 14212 | | | || || | ||| | ||| || || |||| | | ||| |||||| Sbjct 6777 TTCACACGTTG-TTGGCT--AGGTTGTTTACGAATGTGAGTAAACAAAAGACAAGCAAAA 6833 Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 || |||||| || || || | || ||| | ||| || ||| || || || |||||| Sbjct 6834 TCCGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCATC 6893 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332 || || ||||| || | |||||| || | || ||||| || ||||||||||| || || Sbjct 6894 AAACCACGTTTCTTAAGCCAAAAGATAGAGGCAAATGAGCCAGAAAAGAATATACCTTCT 6953 Query 14333 ACTGCAGCAAACGC 14346 ||||||||||| || Sbjct 6954 ACTGCAGCAAAAGC 6967 Score = 86.0 bits (94), Expect = 6e-12 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || || |||||||| | | || || |||||||||| || ||||| || || ||| Sbjct 7150 ATATAGGTATCAATCAAAAGACTGTATGTTTCAGAGTGGATATTTTCAATCATGATTTGA 7209 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAA 14592 || |||||||||||| ||||||| | || || || | | ||||| ||| |||| Sbjct 7210 AAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAAT-TTTGCACCAA 7268 Query 14593 ATTTTCATTAACTATACCATCACTAGCT-GCAAAAAATGCCAA 14634 ||||||||| || ||||||||| |||| ||||| || ||||| Sbjct 7269 ATTTTCATTTACAATACCATCA-GAGCTCGCAAAGAAAGCCAA 7310 >seq2503 Length=34491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/201 (71%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| |||||||| ||||| || || || | || || | ||| || || || || Sbjct 7120 ACAGGCAAAATCGGTGTGAAGACCTTCGTCACGACAGATCAATTCATTACTGAACGTCAA 7179 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 || |||||||| || ||||| ||||||||||| || | |||||||| ||||||||||| Sbjct 7180 ACCGGGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAACCGGAAAAGAA 7239 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || || || || || ||||| || | | ||||| |||| || || ||| || Sbjct 7240 GATGCCTTCGACAGCGGCAAAGGCGACCAGACGTTCAGCAAAGGA---TTCGTTGGATGA 7296 Query 14383 TATCCATTTTCTAGCCCATTC 14403 |||||||| |||||| || Sbjct 7297 GATCCATTTGAAAGCCCAATC 7317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482321959036280