Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3799 170 2e-37 seq3792 136 4e-27 seq2503 114 1e-20 >seq3799 Length=82858 Score = 170 bits (188), Expect = 2e-37 Identities = 545/839 (65%), Gaps = 6/839 (1%) Strand=Plus/Minus Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 ||||| |||||||||||||| | | || ||| | ||| || ||||| || ||||| Sbjct 43786 TTACAAACAGCAACTTCATCGGGGCTTGTATATTCGACAATTTCCGTACAAAGGTTACTA 43727 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 || |||| || ||||| || ||| ||| ||| ||||||||| ||| || || || Sbjct 43726 CATTTAATGGTACCCAAGTTTTGTTGGTTGCTCTTTCTATTACAAGCATCCTTGTAGAGC 43667 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCT 37887 ||| |||| | || ||| |||| || || | |||| | |||||| || ||| Sbjct 43666 ATAAACGGGTTACCGGTTTCAGTTTGTGCTTCCAAGATAGCATACCATAACTTTTGTGCC 43607 Query 37888 TTAACGATCGCTTTAAtttttttCTTTGT-TTCGTATTCTATATATAATTTGTTAAAA-- 37944 |||| || || | | || ||| | ||| || || | |||| | || || Sbjct 43606 TTAATTGTCTCTCTCGCTCTTC-CTTCGCGTTCATAG-CTTTC-ATAAAGAGCTACAAAC 43550 Query 37945 TCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCT 38004 |||| ||||| ||||| || || || ||| ||||| | |||||||| || Sbjct 43549 TCATCACCCCAAACATCTTGCAAACCAGGTGCTTCATTAGGACAAAAGAGAGACCAATCC 43490 Query 38005 TCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCT 38064 || | | | || |||| ||| || | ||| |||||||| | ||| ||| ||||| Sbjct 43489 CCACCGTCCTTGACACGTTGCATGAAGAGATCGGGTACCCAAAGGGCATAAAACAAATCA 43430 Query 38065 TTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCA 38124 || ||| ||| || || || | ||||||||||| || ||| || ||||| Sbjct 43429 CGGGCTCTGATTTCATCCTTACCAAAGTTCTTTCTTAAATCTAAAAAGGTAAAGATATCC 43370 Query 38125 GCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTA 38184 || |||||||| || | ||| || | | ||||| || | || | || || |||| Sbjct 43369 GCATGCCATGGCTCAAGATACATGGCGAAGGCTCCCGGACGCTTGTTGCCACCTTGATCG 43310 Query 38185 ATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCG 38244 | ||| | |||||||||| | | | | ||| || | | |||||| || | || Sbjct 43309 ACATAACGTGCTGTGTTATTGAACACACGCAGCATGGGAAGCAAACCATTCGAATAACCA 43250 Query 38245 TTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCA 38304 ||| |||||| ||||| | || || || || ||||| || | || || ||| Sbjct 43249 TTTGTACCGGCAATATAGGATCCATTGGCACGAATATTGTGAATGTTGAGACCGATACCA 43190 Query 38305 CCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTG 38364 |||||| ||| || ||| || || |||||| || ||| | || ||||| || Sbjct 43189 CCTGCAGTTTTCGAAATTTGGGCACAGATTTTTAATGTTTCATAGATGCCTTCAATTGAA 43130 Query 38365 TCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTA 38424 || ||||| || | || | || ||| ||||| ||||| || || ||||| || Sbjct 43129 TCTTCCTTCATGGTGAGCAAGAAGCAAGAGGACATCTGAGGACGAGGTGTACCGGCATTG 43070 Query 38425 AATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATT 38484 || || || ||| ||||| | || |||| || |||| | || || || || ||| Sbjct 43069 AACAAAGTGGGACTGGCATGAGTAAAGAATTTCTCAGACATCAAGTTGTAAGTCTCAATT 43010 Query 38485 ACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 || | || ||||| | ||||| ||||| | || || | ||| | | |||||| || Sbjct 43009 GCAGCGTCAATATCTTCACCGTGGATACCAATAGCGACACGCATGATAAGATGTTGAGG 42951 >seq3792 Length=31585 Score = 136 bits (150), Expect = 4e-27 Identities = 297/437 (68%), Gaps = 6/437 (1%) Strand=Plus/Plus Query 11342 TGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCC 11401 ||||| ||| ||| || ||| ||||| || ||||| |||| ||||| || ||| Sbjct 6537 TGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTGCAGTGAAATCATGTCC 6596 Query 11402 ATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAAT 11461 |||||| ||| ||||| | | | | | ||| || |||| || |||| Sbjct 6597 ATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCG-AACCCAAGAGCAACCATAAG 6655 Query 11462 -CTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC 11520 | ||| || || ||||| || || ||| |||| ||| | |||||||||| || | | Sbjct 6656 ACGATCAGCAACAAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGC 6715 Query 11521 CACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGA 11580 || || | ||| | || || || |||| ||| ||| || || || || || || Sbjct 6716 AACAGGTAATGCATCAGTTAAGAATTCCTGTTCAATACCTACAGCTTCCATTATAATATC 6775 Query 11581 CGTTATAACTTCCTTAGAT-GGTGGATGTAATAAA-TGTTTAAACATTAAACACGCAAAA 11638 | | | | || || | | ||| | | || || || |||||| | ||| |||||| Sbjct 6776 CTTCACACGTTG-TTGGCTAGGTTGTT-TACGAATGTGAGTAAACAAAAGACAAGCAAAA 6833 Query 11639 TCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATC 11698 || ||| | ||||||||| | || || | ||||||| ||| || || ||||||||| Sbjct 6834 TCCGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCATC 6893 Query 11699 AATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCC 11758 || || ||||| || | |||||| |||| |||||||| |||||||||||||| || || Sbjct 6894 AAACCACGTTTCTTAAGCCAAAAGATAGAGGCAAATGAGCCAGAAAAGAATATACCTTCT 6953 Query 11759 ACAGCTGCAAATGCTAC 11775 || || ||||| || || Sbjct 6954 ACTGCAGCAAAAGCAAC 6970 Score = 111 bits (122), Expect = 1e-19 Identities = 230/338 (68%), Gaps = 11/338 (3%) Strand=Plus/Plus Query 11850 TTGTTTCTATAGCGTTAAATAAATGCATTT---TTTCTATATTATCTCTTACATATGTAT 11906 |||| || ||||| | | ||| |||||| ||||| || |||| ||| ||| |||| Sbjct 7103 TTGTATCAATAGC---AGAGAAAAGCATTTCTTTTTCTTCATCATCTTTTATATAGGTAT 7159 Query 11907 CTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGA 11966 | || || | ||| || |||| || || |||||||| || |||||||| ||||| | Sbjct 7160 CAATCAAAAGACTGTATGTTTCAGAGTGGATATTTTCAATCATGATTTGAAAGCCATAAA 7219 Query 11967 AACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTA 12026 ||||| || || | | | || || || |||| ||| | | ||||| ||||||| Sbjct 7220 AACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAATTTTGCACCAAATTTTCATTTA 7279 Query 12027 CAATACCATCACTAGAT-GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCT 12085 ||||||||||| || | ||||| || || | | | | ||||| || || | Sbjct 7280 CAATACCATCA-GAGCTCGCAAAGAAAGCCAAAACACGAGAAATAAAAAATCGCTCATTC 7338 Query 12086 TTAGTTAAT---TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTC 12142 | ||| | | || |||||||||| | ||| | |||||||| ||||||| | ||| Sbjct 7339 TCAGTCATTTTGTTTTCCCAATCATTTTGGTCTCTACTTAAATCTATTTCTTCAGCTGTC 7398 Query 12143 CAAAAACTTGCCACTGATTGTTTATACATTTTCCAGAT 12180 |||||| ||| ||| | ||||| | || ||| || Sbjct 7399 CAAAAAGATGCTTCTGCCTTCTTATAGAATTGCCAAAT 7436 >seq2503 Length=34491 Score = 114 bits (126), Expect = 1e-20 Identities = 326/500 (65%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 11341 TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTC 11400 |||||| ||| ||| || ||| ||||| || ||||| |||| || || || || Sbjct 6832 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 6891 Query 11401 CATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAA 11460 ||||||| || || ||| | ||||| | | || ||| | || | | | | Sbjct 6892 CATAAAGTCGAATGGGTTAGAGGCATTGTAAATCTTGTCAAAGCCAAGGGCGACCATGAG 6951 Query 11461 TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC 11520 | ||| ||||||||||| || |||||| |||| || | |||||||| || | | Sbjct 6952 ACGATCAGCGACGAATTCAATGTACTGACACATCAAGGTAGCGTTCATACCGATCAATGC 7011 Query 11521 CACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC-- 11578 ||| || | |||| | | || || || | ||| ||| || || || | || || Sbjct 7012 CACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACTGCTTCTACAATAATGTC 7071 Query 11579 ---GACG---TTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACAC 11632 |||| | | ||| || | | | |||||| | | |||| | ||| Sbjct 7072 CTTGACGCGTTGTTGACTGGGTT-GTTTGCGGATGT-------GGGTGAACAAGAGACAG 7123 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||||| || | ||||||||| | || || | ||||||| || || || ||| Sbjct 7124 GCAAAATCGGTGTGAAGACCTTCGTCACGACAGATCAATTCATTACTGAACGTCAAACCG 7183 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 |||||||| || ||||| |||| |||||| || | || |||||||| |||||||| || Sbjct 7184 GGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAACCGGAAAAGAAGATG 7243 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCAT 11812 || || ||||| ||||| || || | | ||| || | | |||| || |||||| Sbjct 7244 CCTTCGACAGCGGCAAAGGCGACCAGACGTTCAGCAAAGGATTCGTTGGATGAGATCCAT 7303 Query 11813 TTTCTGGCCCAATCAGCTTT 11832 || |||||||| || || Sbjct 7304 TTGAAAGCCCAATCGGCCTT 7323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468501836428240