Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3792 187 2e-42 seq2503 91.5 1e-13 >seq3792 Length=31585 Score = 187 bits (206), Expect = 2e-42 Identities = 305/436 (70%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| ||| ||| | |||||||| ||||| || || |||| |||||| || | ||| Sbjct 6537 TGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTGCAGTGAAATCATGTCC 6596 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||| ||||| ||||| ||| |||| | | |||||| | || || | | | | Sbjct 6597 ATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCATAAGA 6656 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | |||||||| ||| ||||| |||||| |||| ||| | |||||||||| || | | Sbjct 6657 CGATCAGCAACAAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGCA 6716 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 ||||| | | || ||||| ||||| | ||| ||| ||||| || |||||||| Sbjct 6717 ACAGGTAATGCATCAGTTAAGAATTCCTGTTCAATACCTACAGCTTCCATTATAATATCC 6776 Query 13824 GTAATAATCTCATTAGAAGG--AGGATATTTTAGA---TGTTTAAAAATTAAACACGCAA 13878 | | | | || | || ||| | ||| || || |||| | | ||| |||| Sbjct 6777 TTCACA----CGTT-GTTGGCTAGGTTGTTTACGAATGTGAGTAAACAAAAGACAAGCAA 6831 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 |||| |||||| || || || | || ||| | ||| || ||| || || || |||| Sbjct 6832 AATCCGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCA 6891 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 |||| || ||||| || | |||||| || | |||||||| || ||||||||||| || | Sbjct 6892 TCAAACCACGTTTCTTAAGCCAAAAGATAGAGGCAAATGAGCCAGAAAAGAATATACCTT 6951 Query 13999 CAACTGCAGCAAACGC 14014 | ||||||||||| || Sbjct 6952 CTACTGCAGCAAAAGC 6967 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 || || |||||||| | | || || |||||||||| || ||||| || || ||| Sbjct 7150 ATATAGGTATCAATCAAAAGACTGTATGTTTCAGAGTGGATATTTTCAATCATGATTTGA 7209 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAA 14261 || |||||||| ||| ||||||| | || ||||| |||| ||| ||||| Sbjct 7210 AAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAATTTTGCACCAAA 7269 Query 14262 TTTTCATTAACTATACCATCACTAGCT-GCAAAAAATGCCAA 14302 |||||||| || ||||||||| |||| ||||| || ||||| Sbjct 7270 TTTTCATTTACAATACCATCA-GAGCTCGCAAAGAAAGCCAA 7310 >seq2503 Length=34491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| |||||||| ||||| || || || | || || | ||| || || || || Sbjct 7120 ACAGGCAAAATCGGTGTGAAGACCTTCGTCACGACAGATCAATTCATTACTGAACGTCAA 7179 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 || |||||||| || ||||| ||||||||||| || | || ||||| ||||||||||| Sbjct 7180 ACCGGGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAACCGGAAAAGAA 7239 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050 || || || || || ||||| || | | ||||| |||| || || ||| || Sbjct 7240 GATGCCTTCGACAGCGGCAAAGGCGACCAGACGTTCAGCAAAGGA---TTCGTTGGATGA 7296 Query 14051 TATCCATTTTCTAGCCCATTC 14071 |||||||| |||||| || Sbjct 7297 GATCCATTTGAAAGCCCAATC 7317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479704487331400