Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3792 208 7e-49 seq2503 111 2e-19 >seq3792 Length=31585 Score = 208 bits (230), Expect = 7e-49 Identities = 323/456 (71%), Gaps = 8/456 (2%) Strand=Plus/Plus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| ||| ||| | |||||||||||||| || || |||| |||||| || | ||| Sbjct 6537 TGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTGCAGTGAAATCATGTCC 6596 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA- 13490 ||||| || || ||||| |||| |||| | | |||||| | || || | || |||| Sbjct 6597 ATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGC-AACCATAAG 6655 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 | |||||||| ||| ||||| |||||| |||| ||| | |||||||||| || | | Sbjct 6656 ACGATCAGCAACAAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGC 6715 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | | || |||||| ||||| | ||| ||| ||||| || |||||||| Sbjct 6716 AACAGGTAATGCATCAGTTAAGAATTCCTGTTCAATACCTACAGCTTCCATTATAATATC 6775 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAA 13667 ||| | | || || | ||| | ||| || || |||| | | ||| ||||| Sbjct 6776 CTTCA-CACGTTGTTGG--CTAGGTTGTTTACGAATGTGAGTAAACAAAAGACAAGCAAA 6832 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||| |||||| || || || | || ||| | ||| || ||| || || || ||||| Sbjct 6833 ATCCGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCAT 6892 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 ||| || ||||| || | |||||| || | || ||||| || ||||||||||| || || Sbjct 6893 CAAACCACGTTTCTTAAGCCAAAAGATAGAGGCAAATGAGCCAGAAAAGAATATACCTTC 6952 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||||||||||| || | || || || |||| || Sbjct 6953 TACTGCAGCAAAAGCAACAAGACGCTCAGCAAATGA 6988 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || || |||||||| | | || || |||||||||| || ||||| || || ||| Sbjct 7150 ATATAGGTATCAATCAAAAGACTGTATGTTTCAGAGTGGATATTTTCAATCATGATTTGA 7209 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 || |||||||||||| ||||||| | || || || |||| ||| |||| Sbjct 7210 AAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAATTTTGCACCAAA 7269 Query 14050 TTTTCATTAACAATACCATCACTAGCT-GCAAAAAATGCCAA 14090 |||||||| |||||||||||| |||| ||||| || ||||| Sbjct 7270 TTTTCATTTACAATACCATCA-GAGCTCGCAAAGAAAGCCAA 7310 >seq2503 Length=34491 Score = 111 bits (122), Expect = 2e-19 Identities = 324/493 (66%), Gaps = 11/493 (2%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| ||| ||| | |||||||||||||| || || |||| || || || | || Sbjct 6832 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 6891 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| |||||||| || | | | | | || ||| | || || | | | | Sbjct 6892 CATAAAGTCGAATGGGTTAGAGGCATTGTAAATCTTGTCAAAGCCAAGGGCGACCATGAG 6951 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 | |||||| | || ||||| || ||| |||| || | |||||||| || | | Sbjct 6952 ACGATCAGCGACGAATTCAATGTACTGACACATCAAGGTAGCGTTCATACCGATCAATGC 7011 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | || | | ||||||| ||| ||| || || || || |||||| Sbjct 7012 CACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACTGCTTC---TACAATAAT 7068 Query 13611 CTTAATAATGTCAT-TAGAAGGAGGATATTTTAG-ATGTT--TAAAAATTAAACACGCAA 13666 | | | | | | || | || | ||| | |||| | || | | ||| |||| Sbjct 7069 GTCCTTGACGCGTTGTTGACTG-GGTTGTTTGCGGATGTGGGTGAACAAGAGACAGGCAA 7127 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 |||| ||||| || || || | || || | ||| || || || || || |||| Sbjct 7128 AATCGGTGTGAAGACCTTCGTCACGACAGATCAATTCATTACTGAACGTCAAACCGGGCA 7187 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 |||| || ||||| ||||||||||| || | |||||||| ||||||||||| || || | Sbjct 7188 TCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAACCGGAAAAGAAGATGCCTT 7247 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846 | || || ||||| || | || ||||| |||| || || ||| ||| ||||||| Sbjct 7248 CGACAGCGGCAAAGGCGACCAGACGTTCAGCAAAGGA---TTCGTTGGATGAGATCCATT 7304 Query 13847 TTCTAGCCCATTC 13859 | |||||| || Sbjct 7305 TGAAAGCCCAATC 7317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478565343166440