Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2543 95.1 9e-15 seq175 95.1 9e-15 seq2672 86.0 5e-12 >seq2543 Length=10996 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | |||| || ||||| | ||||| || | Sbjct 1698 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 1639 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | |||||| || ||||| ||||| || |||||||||| || Sbjct 1638 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 1579 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| | ||||| | ||| | || || |||||| Sbjct 1578 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACC 1519 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || ||||| || ||||||||||| Sbjct 1518 TCCAAAGTGATAGTCTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 1472 >seq175 Length=1843 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | |||| || ||||| | ||||| || | Sbjct 1470 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 1411 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | |||||| || ||||| ||||| || |||||||||| || Sbjct 1410 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 1351 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| | ||||| | ||| | || || |||||| Sbjct 1350 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACC 1291 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || ||||| || ||||||||||| Sbjct 1290 TCCAAAGTGATAGTCTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 1244 >seq2672 Length=76086 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||||| |||| ||| | || || ||||| | ||| || || Sbjct 17844 CCACCTCGTAGTCTTAGTACCAGATGAAGGGTTGATTCTTTTTGAATATTATAGTCACTA 17903 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||||||||||||| ||||| || | || |||||||| | || Sbjct 17904 AGGGTACGGCCATCTTCCAATTGTTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGG 17963 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | || || || ||| | || || || || Sbjct 17964 ATACCTTCTTTATCTTGGATCTTTTGCTTTACGTTGTCAATACTATCAGAAGATTCAACT 18023 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || ||||| |||||||| |||||||| Sbjct 18024 TCCAAAGTAATAGTTTTACCAGTAAGAGTCTTCACAAAGATTTGCAT 18070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381351375419418