Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2503 118 2e-21 seq2423 116 5e-21 seq3903 98.7 1e-15 seq3792 84.2 3e-11 >seq2503 Length=34491 Score = 118 bits (130), Expect = 2e-21 Identities = 296/435 (68%), Gaps = 21/435 (5%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||||| || || ||||| || || |||||||||||||| ||| || || |||||||| Sbjct 7269 CTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCCGGTTCATTCGCCTCCATCTTT 7210 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | ||||| || || | |||||||| ||||| |||||| || || || | ||| Sbjct 7209 TGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACGTTCAGTAATGAATTGATCTGTCGT 7150 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606 ||||| || || ||| || |||||| ||| |||| | || ||| || | | Sbjct 7149 GACGAAGGTCTTCACACCGATTTTGCCTGTCTCTTGTTCACCCAC-ATCCGCAAAC--AA 7093 Query 125607 TGCAGATC--CAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 ||| || || || | |||| ||| |||||| || || || | || |||| Sbjct 7092 CCCAG-TCAACAACG-CGTCAAGGACAT---TATTGTA---GAAGCAGTCGGTATCGAAC 7041 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGC-TAAT 125722 |||| || || | || | || || || ||| |||| || |||||| || | | | || Sbjct 7040 AAGAATTCCTGTCGGATGCTCTGCCTGT-GGCATTGATCGGTATGAAC-GCTACCTTGAT 6983 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG--AGTTGATTGGCCGCAAG 125780 ||| ||||||| || || || || |||||||| || || | | || | |||| Sbjct 6982 GTGTCAGTACATTGAATTCGTCGCTGATCGTCTCATGGTCGCCCTTGGCTTTG--ACAAG 6925 Query 125781 ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840 |||||||| ||| || || || || || ||| || || || || | || |||||| Sbjct 6924 ATTTACAATGCCTCTAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGCAAGACC 6865 Query 125841 AACTTTTTCGAGAAG 125855 |||||||| || ||| Sbjct 6864 AACTTTTTTGAAAAG 6850 Score = 102 bits (112), Expect = 1e-16 Identities = 224/333 (67%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| || | || |||||||| | || ||||||||||| | |||||| | || || Sbjct 7722 ATTTGGCAATTCTATAAAAAGGCCGAAGCTTCCTTTTGGACCGCAGAAGAGATTGACTTG 7663 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||| | | | |||||||| | || | || | || || ||||| ||| Sbjct 7662 AGCAAGGATCAGCATGATTGGGAAAACAAAATGTCAGAGAACGAACGTTTCTTTATCTCG 7603 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | |||||||||||||| ||||| ||||| ||||| || || || || | ||| | Sbjct 7602 CGTGTCTTGGCCTTCTTTGCTGGCTCAGATGGTATCGTGAATGAAAACTTGGT-ACAAAA 7544 Query 125199 -TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 || | | | || | | ||||| || | ||| ||||| || ||||| |||||||| Sbjct 7543 CTTTTGTGATGAAGTCAAGATTCCCGAAGCCAAGTGTTTTTATGGTTTCCAGATCATGAT 7484 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317 ||| ||| | || | |||| ||| | ||||||| | |||||| ||| || Sbjct 7483 TGAAAACATCCATGCTGAAACTTACAGTCTCTTGATTGATACCTACATTAAAGATAACCA 7424 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | || | ||||||||| || ||||| || Sbjct 7423 AGAAAAGGAAATGCTCTTTTCTGCTATCGATAC 7391 >seq2423 Length=40535 Score = 116 bits (128), Expect = 5e-21 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122 ||| || ||||| || ||||| || || ||||||||||| |||| || ||||||| || Sbjct 22947 AGAAGGTGATCTTGGTCCAGTCTATGGGTTCCAGTGGAGACACTTTGGGGCCAAGTACGT 23006 Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 || ||||| || |||||| ||||| || |||||||||| ||| | | || || || Sbjct 23007 TGATTGCGATACTGACTATAGTGGTCAAGGCATTGATCAATTACAGCAAGTGATAGATAC 23066 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 | || | |||||||||||||| | || | | | | ||||||||||||||| | Sbjct 23067 CATTAAAAATAATCCAACAGATAGACGAATTATTCTCTCTGCCTGGAATCCTGCAGATAT 23126 Query 70243 GCACCAAATGGCACTACCACCGTGTCA--CTGTTTGGCTCAGTTTTA 70287 | ||||| |||| || ||||| || |||| ||||||||| Sbjct 23127 TCCTATTATGGCTTTACCTCCTTGTCATGCTTTTTG--TCAGTTTTA 23171 >seq3903 Length=141833 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/187 (73%), Gaps = 10/187 (5%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAG-ACGCTGATCGATATGGCTGCCGACAGAGG 98098 ||||||||||| ||||| ||| || | ||| || | || |||||||| || ||| | || Sbjct 11944 TACAAGACTGTGTGGGAAATTTCG-CAAAGAACCATTATTGATATGGCAGCTGACCGTGG 12002 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 || ||| ||||| ||| ||||||| | || | | | |||||| ||||| ||| Sbjct 12003 TGCCTATATTGATCAGTCTCAATCGATGAACTTATTCACTGCCGA----ACCTAGTTTCG 12058 Query 98159 TA----TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 | ||||||| || || || || || ||||| || || | |||||||||||||||| Sbjct 12059 GAAAGTTGACTTCTATGCATTTCTATGCTTGGAAGAAAGGATTAAAGACGGGCATGTACT 12118 Query 98215 ATCTGAG 98221 || |||| Sbjct 12119 ATTTGAG 12125 >seq3792 Length=31585 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| || | || || ||||| | || || |||||||| | ||||| | ||| | Sbjct 7436 ATTTGGCAATTCTATAAGAAGGCAGAAGCATCTTTTTGGACAGCTGAAGAAATAGATTTA 7377 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 | |||| | |||||||| | ||||||| | ||||||| ||||| || Sbjct 7376 AGTAGAGACCAAAATGATTGGGAAAACAAAATGACTGAGAATGAGCGATTTTTTATTTCT 7317 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | ||||||| |||||||| |||| ||||| || || || || ||| || || | Sbjct 7316 CGTGTTTTGGCTTTCTTTGCGAGCTCTGATGGTATTGTAAATGAAAATTTGGTGCAAAAT 7257 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | | | || | | ||||| || | || ||||| || || |||||||||||| Sbjct 7256 TTTTGTGATGAAGTCAAAATTCCTGAAGCTAAATGTTTTTATGGCTTTCAAATCATGATT 7197 Query 125259 GAGAACGTGCACTCGGAAA 125277 || || | ||||| |||| Sbjct 7196 GAAAATATCCACTCTGAAA 7178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741022878835960