Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3880 122 7e-23 seq2672 104 2e-17 seq2543 93.3 4e-14 seq175 93.3 4e-14 >seq3880 Length=130811 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 ||||| |||| ||| | || |||||||| ||||| ||||| |||||||| || |||||| Sbjct 118855 TTTCCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCG 118796 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | | || | |||||| | ||||||||| ||| | ||||| || |||||||| Sbjct 118795 CTTAATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGT 118736 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||||||||| |||||| |||||| | ||| | |||| || ||| Sbjct 118735 GGAATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTCA 118676 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || || |||||||| || | || ||||| || |||||||| Sbjct 118675 ACTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACGAATATTTGCAT 118626 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||||||| || | ||| ||||| || || ||||| ||||| || || || || | Sbjct 118624 CCACCTCGTAATCTTAGCACTAAATGAAGAGTTGATTCCTTTTGAATATTATAGTCACTG 118565 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||| || ||||||||||| ||| |||| || | |||||||| || Sbjct 118564 AGAGTACGACCATCCTCTAATTGTTTGCCAGCAAAAATGAGACGTTGTTGATCAGGAGGA 118505 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| || || ||| ||||| || || | | | | ||| || ||| | Sbjct 118504 ATGCCTTCCTTATCTTGAATCTTTTGCTTTACGTTATCGATACTATCAGAAGATTCAACT 118445 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| || || | || ||||||||||||||||| Sbjct 118444 TCTAAAGTGATAGTTTTACCAGTAAGGGTCTTGACAAAAATTTGCAT 118398 >seq2672 Length=76086 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 ||||| |||| ||| | || |||||||| || || |||||||||||||| |||||||| Sbjct 17613 TTTCCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCA 17672 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | | ||| | |||||| | |||||| || ||| |||| || || || ||||| Sbjct 17673 CTTAAAGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGCTGATCTGGT 17732 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||| || || |||||| |||||| | ||| || |||| | ||| Sbjct 17733 GGGATACCTTCCTTATCTTGAATTTTGCTTTTCACATTATCAATAGTATCGGAGGATTCA 17792 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || || || ||||| || | || || ||||| |||||||| Sbjct 17793 ACTTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTAACAAAGATTTGCAT 17842 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||||| || | |||| ||| || || ||||||||||| || || || || | Sbjct 17844 CCACCTCGTAGTCTTAGTACCAGATGAAGGGTTGATTCTTTTTGAATATTATAGTCACTA 17903 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||||||||||||||| ||| | || || | |||||||| || Sbjct 17904 AGGGTACGGCCATCTTCCAATTGTTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGG 17963 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || || ||||| || || | | ||| | ||| || ||| | Sbjct 17964 ATACCTTCTTTATCTTGGATCTTTTGCTTTACGTTGTCAATACTATCAGAAGATTCAACT 18023 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| ||||| || || | || || ||||| |||||||| Sbjct 18024 TCCAAAGTAATAGTTTTACCAGTAAGAGTCTTCACAAAGATTTGCAT 18070 >seq2543 Length=10996 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||||||||| |||||||| || | || ||| |||||| Sbjct 1224 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1165 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| | || | | ||||||||| || | ||||| ||||| | Sbjct 1164 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGA 1105 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| | ||| || || ||||| |||||||||||| Sbjct 1104 ATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTA 1045 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || ||||| ||||| ||||| Sbjct 1044 CCAGTGAGGGTCTTGACGAAAATCTGCAT 1016 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || ||||||||||| || ||||| || | || |||||| Sbjct 1452 ACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAAAGGGTACGGCCATCTTCT 1393 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| || | |||||| || || | |||||| ||||| | Sbjct 1392 AATTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGA 1333 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| | ||| || || ||||| |||||||||||| Sbjct 1332 ATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTA 1273 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || ||||| ||||| ||||| Sbjct 1272 CCAGTGAGGGTCTTGACGAAAATCTGCAT 1244 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||||||||| |||||||| || | || ||| |||||| Sbjct 1908 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1849 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| | || | | ||||||||| || | ||||| ||||| | Sbjct 1848 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGA 1789 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| | ||| || || ||||| |||||||||||| Sbjct 1788 ATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTA 1729 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || ||||| ||||| ||||| Sbjct 1728 CCAGTGAGGGTCTTGACGAAAATCTGCAT 1700 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||||||||| |||||||| || | || ||| |||||| Sbjct 2136 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 2077 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| | || | | ||||||||| || | ||||| ||||| | Sbjct 2076 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGA 2017 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| | ||| || || ||||| |||||||||||| Sbjct 2016 ATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTA 1957 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || ||||| ||||| ||||| Sbjct 1956 CCAGTGAGGGTCTTGACGAAAATCTGCAT 1928 >seq175 Length=1843 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || ||||||||||| || ||||| || | || |||||| Sbjct 1224 ACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAAAGGGTACGGCCATCTTCT 1165 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| || | |||||| || || | |||||| ||||| | Sbjct 1164 AATTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGA 1105 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| | ||| || || ||||| |||||||||||| Sbjct 1104 ATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTA 1045 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || ||||| ||||| ||||| Sbjct 1044 CCAGTGAGGGTCTTGACGAAAATCTGCAT 1016 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || ||||||||||| || ||||| || | || |||||| Sbjct 1680 ACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAAAGGGTACGGCCATCTTCT 1621 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| || | |||||| || || | |||||| ||||| | Sbjct 1620 AATTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGA 1561 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| | ||| || || ||||| |||||||||||| Sbjct 1560 ATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTA 1501 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || ||||| ||||| ||||| Sbjct 1500 CCAGTGAGGGTCTTGACGAAAATCTGCAT 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419567149107801