Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2543 89.7 4e-13 seq175 89.7 4e-13 >seq2543 Length=10996 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| || |||||||||||||| ||| ||| || | || || Sbjct 1680 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1621 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || || ||||| | | || ||||| || ||||| || | || ||||||||| | Sbjct 1620 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGA 1561 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||||| | | | ||| |||| | |||||| ||| | || || || || Sbjct 1560 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACCTCCAAAGTGATAGTCTTT 1501 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| ||||| Sbjct 1500 CCGGTAAGTGTTTTGACGAAAATTTGCAT 1472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| || |||||||||||||| ||| ||| || | || || Sbjct 1224 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1165 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || || ||||| | | || ||||| || ||||| || | || ||||||||| | Sbjct 1164 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGA 1105 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||||| | || |||| | |||||| || | || ||||||||| Sbjct 1104 ATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTA 1045 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || ||||||||||| Sbjct 1044 CCAGTGAGGGTCTTGACGAAAATCTGCAT 1016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| || |||||||||||||| ||| ||| || | || || Sbjct 1908 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1849 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || || ||||| | | || ||||| || ||||| || | || ||||||||| | Sbjct 1848 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGA 1789 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||||| | || |||| | |||||| || | || ||||||||| Sbjct 1788 ATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTA 1729 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || ||||||||||| Sbjct 1728 CCAGTGAGGGTCTTGACGAAAATCTGCAT 1700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| || |||||||||||||| ||| ||| || | || || Sbjct 2136 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 2077 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || || ||||| | | || ||||| || ||||| || | || ||||||||| | Sbjct 2076 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGA 2017 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||||| | || |||| | |||||| || | || ||||||||| Sbjct 2016 ATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTA 1957 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || ||||||||||| Sbjct 1956 CCAGTGAGGGTCTTGACGAAAATCTGCAT 1928 >seq175 Length=1843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| || |||||||||||||| ||| ||| || | || || Sbjct 1452 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCATCTTCG 1393 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || || ||||| | | || ||||| || ||||| || | || ||||||||| | Sbjct 1392 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGA 1333 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||||| | | | ||| |||| | |||||| ||| | || || || || Sbjct 1332 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACCTCCAAAGTGATAGTCTTT 1273 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| ||||| Sbjct 1272 CCGGTAAGTGTTTTGACGAAAATTTGCAT 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421231069589921