Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2423 140 4e-28 seq2525 86.0 7e-12 >seq2423 Length=40535 Score = 140 bits (154), Expect = 4e-28 Identities = 295/439 (67%), Gaps = 27/439 (6%) Strand=Plus/Minus Query 6832 TGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCA 6891 ||||| | |||| ||| | ||| || | ||||| |||||||| || || | || || Sbjct 23369 TGATCGATGTAAACATGTGTATCACCCATAGTATGTATAAATTCTCCAGGATCCAAATTT 23310 Query 6892 ACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCT 6951 | || ||||| | || || | ||||| ||||| | |||||||||||||||| Sbjct 23309 GTTACGTGTGCAATCATGCGAGTCAAGAGCGCATAGGAAGCAATATTAAAAGGTACACCT 23250 Query 6952 AATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTG---------TCT 7002 || |||||||| |||| |||||| |||||||| || ||| Sbjct 23249 AACCCCATATCGCAAGATCGCTGATAAAGCACACAAGATAGTTTAGCACGTCCACCATCT 23190 Query 7003 ATAG------------CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGA 7050 || ||||||| ||||| || ||||||| ||||||||| | | | | Sbjct 23189 GAAGGTGGGTTGGAAACATAAAACTGACAAAAAGCATGACAAGGAGGTAAAGC--CATAA 23132 Query 7051 TCT--ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTT 7108 | ||||| | |||||||| |||| | | ||| |||||||| ||||||| ||| Sbjct 23131 TAGGAATATCTGCAGGATTCCAGGCAGAGAGAATAATTCGTCTATCTGTTGGATTA-TTT 23073 Query 7109 TTAATTTTGT-TATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGA 7167 ||||| | | ||| | | ||||||||||| || || ||||| ||| | ||||| Sbjct 23072 TTAATGGTATCTATCACTTGCTGTAATTGATCAATGCCTTGACCACTATAGTCAGTATCG 23013 Query 7168 CAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCA 7227 |||| | || || || ||||| |||||||| || |||||||| | ||||| | |||| Sbjct 23012 CAATCAACGTACTTGGCCCCAAAGTGTCTCCACTGGAACCCATAGACTGGACCAAGATCA 22953 Query 7228 CCTTCTTCACGATGATTAA 7246 |||||| |||||| ||| Sbjct 22952 CCTTCTCGGCGATGAGTAA 22934 >seq2525 Length=73716 Score = 86.0 bits (94), Expect = 7e-12 Identities = 474/749 (63%), Gaps = 36/749 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| | || | ||||| |||||| ||||| |||||| | || Sbjct 58945 AAATTTGAAGACCTTGGTATTGGTGGTCTAGATGATGAATTCAACGCCATTTTCCGTCGT 58886 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA-CATAT 164516 || ||||| ||| | | ||||| | | | |||| || || |||| | ||| | Sbjct 58885 GCCTTTGCATCTCGTATATTTCCTCCTGCCTTGGTCGAAAAGTTGGG-TGTACAGCATGT 58827 Query 164517 AAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT 164576 ||| || || ||| | |||| ||||||||| ||||||||||||||||| || || Sbjct 58826 AAAGGGTATCTTACTTTATGGTCCTCCTGGTACTGGTAAAACATTAATGGCACGTCAGAT 58767 Query 164577 TGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 || | || || || | | |||| || | || | ||| |||||| || || Sbjct 58766 TGGTAAAATGTTGAATGCTAAGGAACCC---AAGGTCGTCAGTGGGCCTGAAGTACTGT- 58711 Query 164634 CAAATATGTAGGTGAGTCA----GAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 |||| || ||| | || || | || || | ||| | ||| |||||||| | Sbjct 58710 CAAA---GTTCGTGGGACAAAGTGAGGAAAACGTACGTAAGCTATTTGCAGAGGCTGAGG 58654 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAAAT-TACATGTTATTGTTTTTGATGAGATA 164748 ||||| | | || | ||| | | | ||| | || ||||| ||||||| || | Sbjct 58653 AAGAATACA-GACAAAAGGGTGAAGAATCCAATCTTCACATTATTATTTTTGACGAACTT 58595 Query 164749 GATGCTCTTTGCAAAAAACGTGGTGATAATATTATTCATGATGCAGT----GGTTAATCA 164804 ||||| | || ||| |||||| | || | |||| ||| ||| | || Sbjct 58594 GATGCAATCTGTAAAGCCCGTGGT---ATGCGTAGTGGTGATACAGGTGTGGGTGACTCT 58538 Query 164805 GTTG--------CTTT---CTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 |||| |||| | || || |||||||| || | || ||||| || ||| Sbjct 58537 GTTGTCAACCAACTTTTGGCCAAGATGGATGGTGTTGAGCAGCTCAACAATATCTTGATT 58478 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | |||||||| ||||| ||| | |||||||| ||| | ||||| || ||||| | Sbjct 58477 ATTGGTATGACTAACCGTAAGGATATGATTGATGAAGCTCTTTTACGTCCCGGTCGTCTT 58418 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 || | | || ||||| || ||||| || ||| ||| || |||||||| | || | Sbjct 58417 GAGGTACACATGGAAATTGGTTTACCTGATGAAGTAGGTCGACTTCAAATCCTCAAGATC 58358 Query 164974 CATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATA 165033 ||| || ||||||| | |||| | | ||||| || |||| || || | Sbjct 58357 CATACTGCAAAAATGAGAGAAAATGATGTCCTTGAGCCCGAAGTGTCTTTAGATGAATTG 58298 Query 165034 GCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAA 165093 || | || ||||| || |||||||||||| || || | || | || ||| Sbjct 58297 GCCGAGCTTACAAAAAACTACAGTGGTGCTGAAATATCTGGTGTGGTTAAGGCTGCTTCT 58238 Query 165094 TCAACCGCATTAAGTCGATGTGTTAAAGT 165122 ||| ||| || ||| || | ||||||| Sbjct 58237 TCATACGCTTTCAGTAGACATATTAAAGT 58209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595842794823600