Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2411 214 3e-51 seq2705 203 5e-48 seq3810 201 2e-47 seq3916 181 2e-41 >seq2411 Length=12011 Score = 214 bits (236), Expect = 3e-51 Identities = 220/284 (77%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | |||| |||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 6248 GCTAAGCGTCACAGAAAGAT-TCTTCGTGATAACATTCAAGGTATCACTAAGCCTGCTAT 6306 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 6307 TCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 6366 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| |||||| | ||||| | | ||| || | ||||||| | ||||| || Sbjct 6367 CCGTAATGTCTTGAAGGTTTTCCTTGAAAACGTCATTCGTGATGCTGTTACTTATACTGA 6426 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| |||| ||||| | || | ||||| Sbjct 6427 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTCGTTTATGCTCTCAAGAGACAAGG 6486 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTT-AATCTTCTAATCAAACT 16714 ||||| |||||||||| || ||| |||| ||||| |||||| Sbjct 6487 CCGTACCCTTTATGGTTTCGGTGGTTAAATCATCTAAACAAACT 6530 >seq2705 Length=35774 Score = 203 bits (224), Expect = 5e-48 Identities = 208/269 (77%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | | ||| |||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 23310 GCTAAGCGTCACAGAAAGAT-TCTTCGTGATAACATTCAAGGTATCACTAAGCCTGCTAT 23252 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 23251 TCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 23192 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| |||||| | ||||| | | ||| || | ||||||| | ||||| || Sbjct 23191 CCGTAATGTCTTGAAGGTTTTCCTTGAAAACGTCATTCGTGATGCTGTTACTTATACTGA 23132 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| |||| ||||| | || | ||||| Sbjct 23131 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTCGTTTATGCTCTCAAGAGACAAGG 23072 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||||| |||||||||| || |||||| Sbjct 23071 CCGTACCCTTTATGGTTTCGGTGGTTAAT 23043 >seq3810 Length=142081 Score = 201 bits (222), Expect = 2e-47 Identities = 207/268 (77%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | |||| |||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 87532 GCTAAGCGTCACAGAAAGAT-TCTTCGTGATAACATTCAAGGTATCACTAAGCCTGCTAT 87590 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 87591 TCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 87650 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| |||||| | ||||| | | ||| || | ||||||| | ||||| || Sbjct 87651 CCGTAATGTCTTGAAGGTTTTCCTTGAAAACGTCATTCGTGATGCTGTTACTTATACTGA 87710 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| |||| ||||| | || | ||||| Sbjct 87711 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTCGTTTATGCTCTCAAGAGACAAGG 87770 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| |||||||||| || ||||| Sbjct 87771 CCGTACCCTTTATGGTTTCGGTGGTTAA 87798 >seq3916 Length=99427 Score = 181 bits (200), Expect = 2e-41 Identities = 206/274 (75%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | |||| |||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 3952 GCTAAGCGTCACAGAAAGAT-TCTTCGTGATAACATTCAAGGTATCACTAAGCCTGCTAT 4010 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 4011 TCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 4070 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| |||||| | ||||| | | ||| || | ||||||| | || || || Sbjct 4071 CCGTAATGTCTTGAAGGTTTTCCTTGAAAACGTCATTCGTGATGCTGTTACTTACACTGA 4130 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | || || || | || | ||||| Sbjct 4131 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTTTACGCTCTCAAGAGACAAGG 4190 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||||| | |||||||| || | ||| || || Sbjct 4191 CCGTACCCTCTATGGTTTCGGTGGATAAGCTGCT 4224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071615002253