Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3792 165 9e-36 seq2503 129 6e-25 >seq3792 Length=31585 Score = 165 bits (182), Expect = 9e-36 Identities = 350/512 (68%), Gaps = 13/512 (3%) Strand=Plus/Plus Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 ||||||||| ||| | ||||| ||||| || ||||| |||| || ||| || ||| Sbjct 6537 TGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTGCAGTGAAATCATGTCC 6596 Query 21248 ATAAAATCAAATGGATT--TTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 ||||| ||||| ||||| || || ||||| ||||| | || || | | ||| Sbjct 6597 ATAAAGTCAAACGGATTCGTTGCCATATAAAT--TTTATCGAACCCAAGAGCA-ACCATA 6653 Query 21306 AT-CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 | | ||| || |||||||| || ||||||||||| || | |||||||||| |||||| Sbjct 6654 AGACGATCAGCAACAAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAAT 6713 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 ||||| | || | || || || | ||| ||| || ||||| | || ||| Sbjct 6714 GCAACAGGTAATGCATCAGTTAAGAATTCCTGTTCAATACCTACAGCTTCCATTATAATA 6773 Query 21425 TTTATTATCC-TAGATGTACTAGGGGGATACAATAAT-TGTTTAAACATCAAACATGCAA 21482 | | | | | | || ||||| | | | ||| || |||||| | ||| |||| Sbjct 6774 TCCTTCACACGTTGTTGG-CTAGGTTGTTT-ACGAATGTGAGTAAACAAAAGACAAGCAA 6831 Query 21483 AATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCA 21542 |||| ||| | |||||| || | || || ||||||||| ||| || |||||||||| Sbjct 6832 AATCCGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCA 6891 Query 21543 TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCT 21602 | || || | || || | |||||| || || ||||||| || |||||||| || || | Sbjct 6892 TCAAACCACGTTTCTTAAGCCAAAAGATAGAGGCAAATGAGCCAGAAAAGAATATACCTT 6951 Query 21603 CAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATT 21662 | || |||||||| ||||| | || ||| | || || || ||| | | ||||||| Sbjct 6952 CTACTGCAGCAAAAGCAACAAGACGCTCAGCAAAT---GAATCATTAGCAGAAATCCATT 7008 Query 21663 TTTCTGCCCATTTTGCCTTTTCTTTAATACAA 21694 | ||||| | ||||| ||||||||| Sbjct 7009 TGAAAGCCCAGTCAGCCTTACGCTTAATACAA 7040 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||| || ||||||| || |||||||| ||| || ||||| || ||||||||| | || Sbjct 7170 ACTGTATGTTTCAGAGTGGATATTTTCAATCATGATTTGAAAGCCATAAAAACATTTAGC 7229 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | | || || || | |||| ||| |||| ||||||||||| || ||||| Sbjct 7230 TTCAGGAATTTTGACTTCATCACAAAAATTTTGCACCAAATTTTCATTTACAATACCATC 7289 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT-- 21943 | | ||||| || ||||| | | |||||| |||| || || || || | | Sbjct 7290 AGAGCTCGCAAAGAAAGCCAAAACACGAGAAATAAAAAATCGCTCATTCTCAGTCATTTT 7349 Query 21944 -TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 |||| |||||| | ||| | |||||||| |||||||| ||||||||| Sbjct 7350 GTTTTCCCAATCATTTTGGTCTCTACTTAAATCTATTTCTTCAGCTGTCCAAAA 7403 >seq2503 Length=34491 Score = 129 bits (142), Expect = 6e-25 Identities = 300/447 (67%), Gaps = 4/447 (1%) Strand=Plus/Plus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||||||| ||| | ||||| ||||| || ||||| |||| | || || || Sbjct 6832 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 6891 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306 |||||| || ||||| || | || | || || | | | || || | || || | Sbjct 6892 CATAAAGTCGAATGGGTTAGAGGCATTGTAAATCTTGTCAAAGCCAAGGGC-GACCATGA 6950 Query 21307 T-CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 | ||| || || ||||| || || |||||||| || | ||||||||||||||| Sbjct 6951 GACGATCAGCGACGAATTCAATGTACTGACACATCAAGGTAGCGTTCATACCGATCAATG 7010 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 ||||| ||||| | | || || || ||| ||| ||| ||||| ||||| || | Sbjct 7011 CCACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACTGCTTCTACAATAATGT 7070 Query 21426 TTATTATCC-TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAA 21484 | | | | | || ||| || | | | || | |||| | ||| |||||| Sbjct 7071 CCTTGACGCGTTGTTG-ACTGGGTTGTTTGCGGATGTGGGTGAACAAGAGACAGGCAAAA 7129 Query 21485 TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATT 21544 || || | |||||| || | || || ||||||||| || || ||||||||||| Sbjct 7130 TCGGTGTGAAGACCTTCGTCACGACAGATCAATTCATTACTGAACGTCAAACCGGGCATC 7189 Query 21545 AATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCA 21604 || || | || ||||||||||| || || || |||| || |||||||| ||||| || Sbjct 7190 AAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAACCGGAAAAGAAGATGCCTTCG 7249 Query 21605 ACGGCAGCAAATGCAACTAATCGTTCA 21631 || || ||||| || || | |||||| Sbjct 7250 ACAGCGGCAAAGGCGACCAGACGTTCA 7276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531874730212040