Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3799 313 6e-80 seq3792 152 1e-31 seq2503 118 3e-21 seq2423 111 4e-19 >seq3799 Length=82858 Score = 313 bits (346), Expect = 6e-80 Identities = 656/966 (68%), Gaps = 14/966 (1%) Strand=Plus/Plus Query 363363 TTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCT 363422 |||||| | ||| || |||| | |||| |||| ||||| | || |||||| || Sbjct 42860 TTATGACAGAGATTTCAAGTACAACTTTTTTGGATTCAAGACTCTCGAACGATCCTATCT 42919 Query 363423 ATCTCGT-ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTA 363481 | ||| || | || | | || || || || || ||| | | |||||||| |||| Sbjct 42920 A-CTCAAGATTGACGGCAAGACTGCCGAGCGTCCTCAACATCTTATCATGCGTGTCGCTA 42978 Query 363482 TTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC 363541 |||||||||| | ||| |||| || || ||||| || || || ||| | || || Sbjct 42979 TTGGTATCCACGGTGAAGATATTGACGCTGCAATTGAGACTTACAA-CTT-GATGT-CTG 43035 Query 363542 GTGTATTC---ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGA 363598 |||| || || |||| || || ||| |||||| || || | | ||| |||| Sbjct 43036 AGAAATTCTTTACTCATGCCAGTCCCACTTTGTTCAATGCCGGTACACCTCGTCCTCAGA 43095 Query 363599 TGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACAC 363658 |||| |||||||| | || | |||||||| ||||| || || || |||| ||| ||| Sbjct 43096 TGTCCTCTTGCTTCTTGCTCACCATGAAGGAAGATTCAATTGAAGGCATCTATGAAACA- 43154 Query 363659 TTAAGAAT-TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAAT 363717 |||| ||| ||||| | ||||| || | |||||| || || ||| | || |||||| Sbjct 43155 TTAAAAATCTGTGCCCAAATTTCGAAAACTGCAGGTGGTATCGGTCTCAACATTCACAAT 43214 Query 363718 GTTCGTGC--ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTC 363775 ||||||| | || | || ||| ||| ||| || || |||||||| || ||| Sbjct 43215 ATTCGTGCCAATGGATC--CTATATTGCCGGTACAAATGGTTATTCGAATGGTTTGCTTC 43272 Query 363776 CCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCA 363835 ||||||| |||||||| | || || || | || ||||| || ||||| ||||| Sbjct 43273 CCATGCTGCGTGTGTTCAATAACACAGCACGTTATGTCGATCAAGGTGGCAACAAGCGTC 43332 Query 363836 AAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGC 363895 || || || || |||||||| ||||| ||||| ||||| ||| ||| | || Sbjct 43333 CGGGAGCCTTCGCCATGTATCTTGAGCCATGGCATGCGGATATCTTTACCTTTTTAGATT 43392 Query 363896 TCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGG 363955 | | || ||| || || || ||| | | || |||||| |||| ||||| ||||||| Sbjct 43393 TAAGAAAGAACTTTGGTAAGGATGAAATCAGAGCCCGTGATTTGTTTTATGCCCTTTGGG 43452 Query 363956 TTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCAC 364015 | | || | || ||| | || || ||| ||| | ||||||| |||||||| || Sbjct 43453 TACCCGATCTCTTCATGCAACGTGTCAAGGACGGTGGGGATTGGTCTCTCTTTTGTCCTA 43512 Query 364016 ACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGT 364075 | ||| || ||| | ||||| |||||||| || | ||| ||||| || |||| | Sbjct 43513 ATGAAGCACCTGGTTTGCAAGATGTTTGGGGTGATGAGTTTGTAGCTCTTTATGAAAGCT 43572 Query 364076 ATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCA 364135 ||||| || |||| || | |||||||| ||||| ||| |||||| ||| ||| Sbjct 43573 ATGAACGCGAAGGAAGAGCGAGAGAGACAATTAAGGCACAAAAGTTATGGTATGCTATCT 43632 Query 364136 TGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCA 364195 |||| | || | ||| || || | || | |||| | ||||| ||| | || || | | Sbjct 43633 TGGAAGCACAAACTGAAACCGGTAACCCGTTTATGCTCTACAAGGATGCTTGTAATAGAA 43692 Query 364196 AGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTG 364255 || |||||| || || | ||||| ||| | || ||||| ||||| || ||| | | Sbjct 43693 AGAGCAACCAACAAAACTTGGGTACCATTAAATGTAGTAACCTTTGTACGGAAATTGTCG 43752 Query 364256 AATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT 364315 |||| || ||||| || ||| || |||||| | || || ||||| | || | | Sbjct 43753 AATATACAAGCCCCGATGAAGTTGCTGTTTGTAACTTGGCTTCTATCGCTTTACCCACTT 43812 Query 364316 TTGTAA 364321 |||||| Sbjct 43813 TTGTAA 43818 >seq3792 Length=31585 Score = 152 bits (168), Expect = 1e-31 Identities = 352/526 (67%), Gaps = 17/526 (3%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAAC---AATGAACGTTCATTCGCG 22488 |||||| |||||| || ||||| | |||||||| ||||| |||||| || Sbjct 7036 ATTAAGCGTAAGGCTGACTGGGCTTTCAAATGGATTTCTGCTAATGA---TTCATTTGCT 6980 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || |||||| |||| ||||||| || ||||| || ||||||||||| ||||| | Sbjct 6979 GAGCGTCTTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCTGGCTCATTTGCCTCT 6920 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||||||||| || ||||||| | ||||| ||| | || ||| ||||| || ||| Sbjct 6919 ATCTTTTGGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAATGAATTGATT 6860 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATT 22668 | || || || ||||||||||| |||||||| ||| | | | | | ||| |||| Sbjct 6859 TGTCGTGACGAAGGTCTTCATACGGATTTTGCTTGTCTTTTGTTT---ACTCA---CATT 6806 Query 22669 CATAAACTTCCATATGAAAC----TGTACTTGATATTATTACAAATGCAGTTGAACTTGA 22724 | ||||| || || ||| ||| |||||||| | | || || | |||| Sbjct 6805 CGTAAACAACC-TAGCCAACAACGTGTGAAGGATATTATAATGGAAGCTGTAGGTATTGA 6747 Query 22725 ACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAAT 22784 || ||| | || || ||||| || | |||||||| ||| | | || Sbjct 6746 ACAGGAATTCTTAACTGATGCATTACCTGTTGCATTGATTGGTATGAATTCTACTTTGAT 6687 Query 22785 GAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCA 22844 | || ||| ||| |||||||||| |||||||| | || | || || | | || Sbjct 6686 GTGTCAATACATTGAATTTGTTGCTGATCGTCTTATGGTTGCTCTTGGGTTCGATAAAAT 6627 Query 22845 TTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAA 22904 ||||| | ||||| ||||| | ||||| | |||||||| |||| |||||||| Sbjct 6626 TTATATGGCAACGAATCCGTTTGACTTTATGGACATGATTTCACTGCAAGGGAAGACCAA 6567 Query 22905 TTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || ||||| | ||| ||| || || || ||||| ||| Sbjct 6566 CTTTTTTGAAAAGCGTGTTTCTGATTATCAGCGTGCTGGTGTCATG 6521 >seq2503 Length=34491 Score = 118 bits (130), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT-TCATTCGCGGA 22490 |||||| |||||| |||||||| | |||||||| || |||| || || || || Sbjct 7332 ATTAAGCGTAAGGCCGATTGGGCTTTCAAATGGATCT-CATCCAACGAATCCTTTGCTGA 7274 Query 22491 ACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAAT 22550 |||||| | || ||||| | || |||||||| |||||||| || |||| | || Sbjct 7273 ACGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCCGGTTCATTCGCCTCCAT 7214 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 ||||||| |||| ||||||| | ||||| ||| | ||||| ||||| || || | Sbjct 7213 CTTTTGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACGTTCAGTAATGAATTGATCTG 7154 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 || || || |||||||| ||||||||||| ||| Sbjct 7153 TCGTGACGAAGGTCTTCACACCGATTTTGCCTGT 7120 >seq2423 Length=40535 Score = 111 bits (122), Expect = 4e-19 Identities = 405/623 (65%), Gaps = 42/623 (7%) Strand=Plus/Plus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 |||||| || ||||| |||||||| || | | || || ||||||||||||| || Sbjct 22776 TTTTCCTCTCCTCACCACAAAGCGTGTATTCTTTAGAGGTGTTCTCGAAGAACTTCTTTG 22835 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA-GCAAAAAATGTAAAAATTTGGG 111432 |||||| || ||| || |||| ||||| | | ||||| || || |||| Sbjct 22836 GTTTATCAAGGGTGATACTAACTCAAA-ACACTTGAATGAGCGTAATGTCAAGATCTGGG 22894 Query 111433 ATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTT-GTCGACAACGAAGAAGGT 111491 |||| ||||| || ||||| || || ||| | || ||| || | || ||||||| Sbjct 22895 ATGGCAATGGCTCTCGTGAGTTCCTTGATAAGCTGGGCCTTACTCATCGCCG-AGAAGGT 22953 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTAC----AAAAC 111547 ||||| || ||||| || || || || ||| | |||||||| || | ||| | | Sbjct 22954 GATCTTGGTCCAGTCTATGGGTTCCAGTGGAGACACTTTGGGGCCAAGTACGTTGATTGC 23013 Query 111548 CATGCACGACTCATA-TGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAA 111606 || | |||| ||| || | || || | ||||||||||||| | || || ||| | Sbjct 23014 GATAC-TGACT-ATAGTGGT---CAAGGCATTGATCAATTACAGCAAGTGATAGATACCA 23068 Query 111607 TTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCA---T 111663 |||| || || ||||| | | || |||||| | ||| ||||| || |||| Sbjct 23069 TTAAAAATAATCCAACAGATAGACGAATTATTCTCTCTGCCTGGAATCC---TGCAGATA 23125 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT-----ACAC-- 111716 | | ||||| | || || |||||| | | || ||||||||||| || | Sbjct 23126 TTCCTATTATGGCTTTACCTCCTTGTCATGCTTTTTGTCAGTTTTATGTTTCCAACCCAC 23185 Query 111717 ------------GACGGG--ATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTG 111762 |||| | | || || || | |||||||||||| ||||| | Sbjct 23186 CTTCAGATGGTGGACGTGCTAAACTATCTTGTGTGCTTTATCAGCGATCTTGCGATATGG 23245 Query 111763 GTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATT 111822 | | ||||| || ||||||||||| || || || | ||| || | || || || Sbjct 23246 GGTTAGGTGTACCTTTTAATATTGCTTCCTATGCGCTCTTGACTCGCATGATTGCACACG 23305 Query 111823 TTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAA 111882 | |||||| | | || || ||||| || || ||| || ||| | |||||||||| Sbjct 23306 TAACAAATTTGGATCCTGGAGAATTTATACATACTATGGGTGATACACATGTTTACATCG 23365 Query 111883 ACCACATTGATGCACTTAAAACA 111905 | ||| | |||||| || ||||| Sbjct 23366 ATCACTTGGATGCA-TTGAAACA 23387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303288122366222