Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2543 107 2e-18 seq175 107 2e-18 seq3880 104 2e-17 seq2672 102 7e-17 >seq2543 Length=10996 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || |||||||||||| | ||| ||||| Sbjct 1244 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAAGTCGAGTCTTCT 1303 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | ||| | | || || ||||| ||| || || |||||| |||| || || Sbjct 1304 GATAGTATTGAAAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGACCAA 1363 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || |||| ||| || |||||||||||||||| | ||| | | || || || Sbjct 1364 CAGCGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGCCGTACCCTTTCAGACTACAAT 1423 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || |||||||| || ||| | ||| |||| Sbjct 1424 ATCCAAAAAGAATCCACTCTCCATTTGGT 1452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || |||||||||||| | ||| ||||| Sbjct 1016 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAAGTCGAGTCTTCT 1075 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | ||| | | || || ||||| ||| || || ||||| | || ||||| Sbjct 1076 GATAGTATTGAAAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAA 1135 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||| | ||||||| | || || || || ||| Sbjct 1136 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTTGAGTGACTACAAC 1195 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||| || ||| | || |||| Sbjct 1196 ATTCAAAAAGAATCCACTCTTCACTTGGT 1224 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || |||||||||||| | ||| ||||| Sbjct 1700 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAAGTCGAGTCTTCT 1759 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | ||| | | || || ||||| ||| || || ||||| | || ||||| Sbjct 1760 GATAGTATTGAAAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAA 1819 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||| | ||||||| | || || || || ||| Sbjct 1820 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTTGAGTGACTACAAC 1879 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||| || ||| | || |||| Sbjct 1880 ATTCAAAAAGAATCCACTCTTCACTTGGT 1908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || |||||||||||| | ||| ||||| Sbjct 1928 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAAGTCGAGTCTTCT 1987 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | ||| | | || || ||||| ||| || || ||||| | || ||||| Sbjct 1988 GATAGTATTGAAAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAA 2047 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||| | ||||||| | || || || || ||| Sbjct 2048 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTTGAGTGACTACAAC 2107 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||| || ||| | || |||| Sbjct 2108 ATTCAAAAAGAATCCACTCTTCACTTGGT 2136 >seq175 Length=1843 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || |||||||||||| | ||| ||||| Sbjct 1016 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAAGTCGAGTCTTCT 1075 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | ||| | | || || ||||| ||| || || |||||| |||| || || Sbjct 1076 GATAGTATTGAAAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGACCAA 1135 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || |||| ||| || |||||||||||||||| | ||| | | || || || Sbjct 1136 CAGCGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGCCGTACCCTTTCAGACTACAAT 1195 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || |||||||| || ||| | ||| |||| Sbjct 1196 ATCCAAAAAGAATCCACTCTCCATTTGGT 1224 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || |||||||||||| | ||| ||||| Sbjct 1472 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAAGTCGAGTCTTCT 1531 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | ||| | | || || ||||| ||| || || |||||| |||| || || Sbjct 1532 GATAGTATTGAAAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGACCAA 1591 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || |||| ||| || |||||||||||||||| | ||| | | || || || Sbjct 1592 CAGCGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGCCGTACCCTTTCAGACTACAAT 1651 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || |||||||| || ||| | ||| |||| Sbjct 1652 ATCCAAAAAGAATCCACTCTCCATTTGGT 1680 >seq3880 Length=130811 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || || || || ||||| || || | ||| || || Sbjct 118398 ATGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 118457 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | | | | ||||| ||||| ||| ||||| |||||| | || |||||| Sbjct 118458 GATAGTATCGATAACGTAAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCTGATCAA 118517 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || |||| ||| |||||||||||||| |||| || | || ||||| Sbjct 118518 CAACGTCTCATTTTTGCTGGCAAACAATTAGAGGATGGTCGTACTCTCAGTGACTATAAT 118577 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || || ||| | ||| | ||| | ||||| ||||| || Sbjct 118578 ATTCAAAAGGAATCAACTCTTCATTTAGTGCTAAGATTACGAGGTGG 118624 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||| || || || || ||||| || || | ||| || || | Sbjct 118626 ATGCAAATATTCGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 118685 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| |||||| || |||||||| | || ||||| Sbjct 118686 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 118745 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||||||||| | ||| ||||||||| ||||||||| || | ||||||||| Sbjct 118746 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAGCGATTATAAT 118805 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 || ||||| || || || | ||| |||| || | || |||| ||||| Sbjct 118806 ATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGGAAA 118855 >seq2672 Length=76086 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || || || || ||||| ||||| | ||| || || Sbjct 18070 ATGCAAATCTTTGTGAAGACTCTTACTGGTAAAACTATTACTTTGGAAGTTGAATCTTCT 18011 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || | | ||| |||| ||||| ||||| || ||||||||||| |||| ||||| Sbjct 18010 GATAGTATTG-ACAACGTAAAGCAAAAGATCCAAGATAAAGAAGGTATCCCACCAGATCA 17952 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| ||||||||||| ||||||| | ||| | || ||||| Sbjct 17951 ACAACGTCTCATCTTTGCAGGCAAACAATTGGAAGATGGCCGTACCCTTAGTGACTATAA 17892 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || | ||| |||| | ||| | ||||| || Sbjct 17891 TATTCAAAAAGAATCAACCCTTCATCTGGTACTAAGACTACGAGGTGG 17844 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || || || || || || || || | ||| || ||| | Sbjct 17842 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 17783 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || ||| |||||| ||||| ||||| |||| |||||| Sbjct 17782 GATACTATTGATAATGTGAAAAGCAAAATTCAAGATAAGGAAGGTATCCCACCAGATCAG 17723 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| |||| ||| || |||||| | ||||||| || | ||||| || Sbjct 17722 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAAGTGATTACAAT 17663 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 || |||||||| || || | ||| |||| || | || |||| ||||| Sbjct 17662 ATACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGGAAA 17613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425323674006520