Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3799 123 2e-23 seq2543 122 8e-23 seq3789 116 3e-21 seq175 113 4e-20 seq3850 93.3 4e-14 >seq3799 Length=82858 Score = 123 bits (136), Expect = 2e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| | ||| | || || | | ||||||||| ||| | |||||| ||| | || Sbjct 44423 TTGACCATTTGATATTCACCCGAGAGCACACGACGGGTATAAAAGTTAGAAGTGTAAGGC 44364 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 |||||| |||| || |||| ||||||| ||| | ||||| ||||| || | | Sbjct 44363 TCAAAACACTCATTGAAACCCAACATTTGAGAGGTAGAGGCGGTAGGCATAGGGGCTAAC 44304 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || | ||||||||| | ||||||||| || | ||||||||| | | |||| ||||| Sbjct 44303 AAAAGTGAATTGCGAACGCCGTGCTTGGCTATCTTTTCCTTTAGTGAAGCCCAGTCCCAA 44244 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCT 145283 || || || || |||| | |||||||||||| || || ||||||| Sbjct 44243 AGAGAGGTGGGTGTCACATTCCACATGTCGTATTGTAAGATGCCCT 44198 >seq2543 Length=10996 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || || |||||||||||||| || ||| Sbjct 1242 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 1183 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || || |||| ||||| || || || ||||| Sbjct 1182 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 1123 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | || | | |||| | ||||||| Sbjct 1122 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACT 1063 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || || || |||||||||||||| Sbjct 1062 TCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1016 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || || |||||||||||||| || ||| Sbjct 1926 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 1867 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || || |||| ||||| || || || ||||| Sbjct 1866 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 1807 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | || | | |||| | ||||||| Sbjct 1806 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACT 1747 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || || || |||||||||||||| Sbjct 1746 TCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1700 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || || || |||||||||||||| || ||| Sbjct 2154 CCGCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 2095 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || || |||| ||||| || || || ||||| Sbjct 2094 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 2035 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | || | | |||| | ||||||| Sbjct 2034 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACT 1975 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || || || |||||||||||||| Sbjct 1974 TCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1928 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || || ||||| || ||||| || Sbjct 1470 CCACCACGAAGACGAAGGACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1411 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || |||| || || || || | || | |||||| ||||| |||||| Sbjct 1410 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGG 1351 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | || | | |||| | ||||||| Sbjct 1350 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACT 1291 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || || || |||||||||||||| Sbjct 1290 TCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1244 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || || |||||||||||||| || ||| Sbjct 1698 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 1639 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || || |||| ||||| || || || ||||| Sbjct 1638 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 1579 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | ||| | |||| | ||||||| Sbjct 1578 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACC 1519 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || ||||| |||||||| ||||| Sbjct 1518 TCCAAAGTGATAGTCTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 1472 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || || |||||||||||||| || ||| Sbjct 1014 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 955 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || || |||| ||||| || || || ||||| Sbjct 954 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 895 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | ||| | |||| | || |||| Sbjct 894 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGATTCGACT 835 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTAT--TTTA 131245 || | || | || || ||||| ||||| ||||| || || |||||| |||| |||| Sbjct 834 TCTAAAGTGATAGTCTTTCCGGTAAGAGTCTTTACAAAGATTTGCATGCTTTATAATTTA 775 Query 131246 T 131246 | Sbjct 774 T 774 >seq3789 Length=135228 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || ||||||||||||||||| || ||| Sbjct 104632 CCACCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCACTC 104573 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || || |||| ||||| || || || ||||| Sbjct 104572 AAAGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAAACGTTGTTGATCAGGAGGA 104513 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||||||| | ||| | | |||| | ||| |||| Sbjct 104512 ATACCTTCCTTGTCTTGGATTTTTTGCTTGACATTCTCAATACTATCAGAGGATTCGACC 104453 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || ||||| || || || ||||| Sbjct 104452 TCCAAAGTGATTGTCTTGCCAGTAAGTGTTTTAACAAAGATTTGCAT 104406 >seq175 Length=1843 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || || ||||| || ||||| || Sbjct 1242 CCACCACGAAGACGAAGGACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1183 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || |||| || || || || | || | |||||| ||||| |||||| Sbjct 1182 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGG 1123 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | || | | |||| | ||||||| Sbjct 1122 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACT 1063 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || || || |||||||||||||| Sbjct 1062 TCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1016 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || || ||||| || ||||| || Sbjct 1698 CCACCACGAAGACGAAGGACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1639 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || |||| || || || || | || | |||||| ||||| |||||| Sbjct 1638 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGG 1579 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | || | | |||| | ||||||| Sbjct 1578 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACT 1519 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || || || |||||||||||||| Sbjct 1518 TCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1472 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || || |||||||||||||| || ||| Sbjct 1470 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 1411 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || || |||| ||||| || || || ||||| Sbjct 1410 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 1351 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | ||| | |||| | ||||||| Sbjct 1350 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACC 1291 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || ||||| |||||||| ||||| Sbjct 1290 TCCAAAGTGATAGTCTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 1244 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || || |||||||||||||| || ||| Sbjct 1014 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 955 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || || |||| ||||| || || || ||||| Sbjct 954 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 895 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||||| | ||| | |||| | || |||| Sbjct 894 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGATTCGACT 835 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTAT--TTTA 131245 || | || | || || ||||| ||||| ||||| || || |||||| |||| |||| Sbjct 834 TCTAAAGTGATAGTCTTTCCGGTAAGAGTCTTTACAAAGATTTGCATGCTTTATAATTTA 775 Query 131246 T 131246 | Sbjct 774 T 774 >seq3850 Length=152326 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| || ||||||||||||||||| |||||| Sbjct 95249 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCGCTC 95308 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| |||| || || || ||| | || | ||| || ||||| ||||| Sbjct 95309 AAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGGTCAGGAGGA 95368 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || ||||| ||||| || || ||||||| Sbjct 95369 ATACCTTCCTTGTCTTGAATCTTTTGCTTGA 95399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471989665472640