Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3792 163 3e-35 seq2503 149 7e-31 >seq3792 Length=31585 Score = 163 bits (180), Expect = 3e-35 Identities = 390/579 (67%), Gaps = 17/579 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| ||||| ||||| | || ||| || |||| || |||| ||||| |||||| Sbjct 6473 TTAAAAATCAGCATCCAAAGTGAATTTTTTCTCAACAGGGGTCTTGTTCATGACACCAGC 6532 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 || || || ||| |||||||| || || ||||| |||| || || ||| Sbjct 6533 ACGCTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTGCAGTGAAATCAT 6592 Query 92862 ATTCACTA-GTGATT-GGATTCTTGGCGTTATAATACTTTTC--ACCGATCAACTCGTAC 92917 | || | || | |||||| | || ||||| || || ||| | | | || Sbjct 6593 GTCCATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCA---AC 6649 Query 92918 AATAAT-CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 |||| | |||||| |||||||| ||||| ||| |||||||| | ||||||| || | Sbjct 6650 CATAAGACGATCAGCAACAAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAAT 6709 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | ||||||| || || || ||||| || | || || | || ||||| | | Sbjct 6710 CAATGCAACAGGTAATGCATCAGTTAAGAATTCCTGTTCAATACCTACAGCTTCCATTAT 6769 Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACA-TAATTGTACATTAAGCACG 93095 || || | || | | || | | | || | ||||| | | | ||| | || | Sbjct 6770 AATATCCTTCACACGT-TGTTGGCTAGGTTGTTTACGAATGTGAGTAAACAAAAGACAAG 6828 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 |||| || ||||| | ||||||||| || | ||||| ||||| || || || ||||| | Sbjct 6829 CAAAATCCGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGG 6888 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | || || |||||||| |||||||| || || ||||| |||||||| ||||||| Sbjct 6889 GCATCAAACCACGTTTCTTAAGCCAAAAGATAGAGGCAAATGAGCCAGAAAAGAATATAC 6948 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA--T 93273 |||| || || ||||| || |||| ||| || ||||| || |||| || || | Sbjct 6949 CTTCTACTGCAGCAAAAGCAACAAGACGCTCAGCAAA---TGAATCATTA--GCAGAAAT 7003 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 |||||| |||||||| || || || |||||||||||| Sbjct 7004 CCATTTGAAAGCCCAGTCAGCCTTACGCTTAATACAAGG 7042 Score = 104 bits (114), Expect = 3e-17 Identities = 197/284 (69%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| ||| || ||||| || || ||| || ||||||| |||| ||| || || Sbjct 7143 ATCTTTTATATAGGTATCAATCAAAAGACTGTATGTTTCAGAGTGGATATTTTCAATCAT 7202 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||| || || || |||||| ||||||| | || | ||||| | | |||| | | Sbjct 7203 GATTTGAAAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAATTTTG 7262 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCT-GCaaaaaaaGCCAATATATGCTTTA 93533 || | ||||||||| || |||||||| || ||| ||||| |||||||| | | | | Sbjct 7263 CACCAAATTTTCATTTACAATACCATCAGA-GCTCGCAAAGAAAGCCAAAACACGAGAAA 7321 Query 93534 TAAAATGTTTCTCAT---CA-TCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589 ||||| | ||||| || || || | || |||||||| | | ||| | | | Sbjct 7322 TAAAAAATCGCTCATTCTCAGTCATTTTGTTT-TCCCAATCATTTTGGTCTCTACTTAAA 7380 Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 || | |||||| | |||||||| ||||||||||| || || || Sbjct 7381 TCTATTTCTTCAGCTGTCCAAAAAGATGCTTCTGCCTTCTTATA 7424 >seq2503 Length=34491 Score = 149 bits (164), Expect = 7e-31 Identities = 269/390 (69%), Gaps = 9/390 (2%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| || ||||| ||||||||| ||||||| | ||||| || | | || Sbjct 6955 ATCAGCGACGAATTCAATGTACTGACACATCAAGGTAGCGTTCATACCGATCAATGCCAC 7014 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||| ||||| || | || ||| |||| ||||| | || |||||| | || || | Sbjct 7015 AGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACTGCTTCTACAATAATGTCCTT 7074 Query 93046 TACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCAAAGTCGG 93104 || | | || ||| || | | || | | || ||| | || ||||| |||| Sbjct 7075 GACGCGT-TGTTGACTGGGTTGTTTGCGGATGTGGGTGAACAAGAGACAGGCAAAATCGG 7133 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 | || | ||||||||| || | ||||| ||||| ||||| || ||||| || | || | Sbjct 7134 TGTGAAGACCTTCGTCACGACAGATCAATTCATTACTGAACGTCAAACCGGGCATCAAAC 7193 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | |||||||| | |||||| || || || || ||| ||||| || || ||||| || | Sbjct 7194 CACGTTTCTTTAACCAAAAGATGGAGGCGAATGAACCGGAAAAGAAGATGCCTTCGACAG 7253 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAA--ATTTGCGGAATTACTGCTGATCCATTTTAA 93282 | ||||| || || | |||||| ||||| ||| | | || | ||||||||| || Sbjct 7254 CGGCAAAGGCGACCAGACGTTCAGCAAAGGATTCGTTGGATGA-----GATCCATTTGAA 7308 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 |||||||||||| || ||||||||| || Sbjct 7309 AGCCCAATCGGCCTTACGCTTAATACAGGG 7338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556833506860040