Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3880 118 8e-22 seq2672 102 6e-17 seq3789 89.7 4e-13 >seq3880 Length=130811 Score = 118 bits (130), Expect = 8e-22 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| | || || | || |||||||| || || | ||| ||| | | Sbjct 118626 ATGCAAATATTCGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 118685 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || ||||| ||| | || | | ||| Sbjct 118686 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 118745 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 || ||||||||||||||||||||||||||||||||| | | | || | |||||| | Sbjct 118746 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAG--CGATTATA 118803 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT 22064 |||| || |||||||| || || ||| |||||||||||||| |||| ||| || Sbjct 118804 ATATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGGAAAT 118856 >seq2672 Length=76086 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || ||||| || || || | ||| ||| || | Sbjct 17842 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 17783 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| ||||| || ||| | || | | || Sbjct 17782 GATACTATTGATAATGTGAAAAGCAAAATTCAAGATAAGGAAGGTATCCCACCAGATCAG 17723 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || |||||||| |||||||| |||||| ||| | ||||||||| Sbjct 17722 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAAGTGATTACAAT 17663 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT 22064 || || || ||||| || |||||| |||||||||||||| |||| ||| || Sbjct 17662 ATACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGGAAAT 17612 >seq3789 Length=135228 Score = 89.7 bits (98), Expect = 4e-13 Identities = 175/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| ||| |||||||| | || ||||| || || || |||| ||| || Sbjct 104403 AAAATGCAAATCTTTGTTAAAACACTTACTGGCAAGACAATCACTTTGGAGGTCGAATCC 104462 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || | | | || | ||||||||||| || || || ||| | ||| | Sbjct 104463 TCTGATAGTATTGAGAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTGAT 104522 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | | ||||||||||| || || || |||||| ||| || || ||| Sbjct 104523 CAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACTTTGAGTGACTAC 104582 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAA 22070 || ||||| |||||||| ||||| || |||| | ||| | || || || | ||||| Sbjct 104583 AACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCCGTCTTCGTGGTGGTTTTTAATTT 104642 Query 22071 TAAAAACCATAAATATACA 22089 | ||| ||||| | ||| Sbjct 104643 TTAAACAAATAAAAAAACA 104661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358107686223034