Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2503 140 6e-28 seq3799 89.7 1e-12 >seq2503 Length=34491 Score = 140 bits (154), Expect = 6e-28 Identities = 340/506 (67%), Gaps = 18/506 (4%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTC--CCGACGCAA 42690 ||||| || ||| ||||| || ||||| |||| |||||| || || ||| | Sbjct 7338 CCCTGTATTAAGCGTAAGGCCGATTGGGCTTTCAAATGGATC-----TCATCCAACGAAT 7284 Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | || | || | ||||| |||||| |||| ||||| ||||||||||| || || | | Sbjct 7283 CCTTTGCTGAACGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCCGGTTCAT 7224 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG--TCGATGCCCGGACTCACCTTCTCGAA 42808 ||||||||||||| ||| | ||| || ||| | ||||||||| | || ||| || Sbjct 7223 TCGCCTCCATCTTTTGGTTAAAG--AAACGTGGTTTGATGCCCGGTTTGACGTTCAGTAA 7166 Query 42809 CGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAG 42868 ||| | ||| | | ||||| || || || | || |||||||| ||| ||||| | Sbjct 7165 TGAATTGATCTGTCGTGACGAAGGTCTTCACACCGATTTTGCCTGTCTCTTGTTC---AC 7109 Query 42869 CCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 |||| || | | | ||| | | || ||| || ||| || || || || | Sbjct 7108 CCACATCCGCAAACAACCCAGTCAACAACGCGTCAAGGACATTATTGTAGAAGCAGTCGG 7049 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988 ||||| | || ||||| || | | ||||| ||| | || |||| ||||| | | | Sbjct 7048 TATCGAACAAGAATTCCTGTCGGATGCTCTGCCTGTGGCATTGATCGGTATGAA-CGCTA 6990 Query 42989 CC-TCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046 || | ||||| ||||||| | | |||||| || | |||| | || | ||| | | Sbjct 6989 CCTTGATGTGTCAGTACATTGAATTCGTCGCTGATCGTCTCATGGTCGCCCTTGGCTTTG 6930 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | | ||||| | | ||| |||||||||||||| | ||||| | | ||| Sbjct 6929 A-CAAGATTTACAATGCCTCTAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGC 6871 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGT 43132 |||||||||||||| || ||||| || Sbjct 6870 AAGACCAACTTTTTTGAAAAGCGTGT 6845 >seq3799 Length=82858 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 || || | |||| ||| || || ||||||||||| | ||||||||||| ||||| | | Sbjct 43510 GGACAAAAGAGAGACCAATCCCCACCGTCCTTGACACGTTGCATGAAGAGATCGGGTACC 43451 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCT--CGTCCGAGCCAGTGTTCTTCCTCA 245087 || ||||| | || | || | || ||||| | | ||| ||| |||||| || | Sbjct 43450 CAAAGGGCATAAAACAAATCACGGG--CTCTGATTTCATCCTTACCAAAGTTCTTTCTTA 43393 Query 245088 GCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGG 245147 || |||||| ||||| || | ||||| ||||| | || | |||| ||| || | Sbjct 43392 AATCTAAAAAGGTAAAGATATCCGCATGCCATGGCTCAAGATACATGGCGAAGGCTCCCG 43333 Query 245148 GCCGCTTGTTGCCTCCCTGGTCCAC 245172 | ||||||||||| || || || || Sbjct 43332 GACGCTTGTTGCCACCTTGATCGAC 43308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944292915574960