Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2672 158 3e-33 seq2543 131 4e-25 seq175 131 4e-25 seq3880 125 2e-23 seq2503 113 1e-19 seq3792 100 7e-16 >seq2672 Length=76086 Score = 158 bits (174), Expect = 3e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| ||||| ||||||| || ||||||||| ||||||||||| Sbjct 17844 CCACCTCGTAGTCTTAGTACCAGATGAAGGGTTGATTCTTTTTGAATATTATAGTCACTA 17903 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| |||||||| ||||| ||||| ||||| |||||| |||| Sbjct 17904 AGGGTACGGCCATCTTCCAATTGTTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGG 17963 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||||||||| ||||| ||| ||||| ||||| || ||| ||| ||||| || Sbjct 17964 ATACCTTCTTTATCTTGGATCTTTTGCTTT-ACGTTGTCAATACTATCAGAAGATTCAAC 18022 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||| | || || || || || || |||||||| || || || ||||| || Sbjct 18023 TTCCAAAGTAATAGTTTTACCAGTAAGAGTCTTCACAAAGATTTGCATAAT 18073 >seq2543 Length=10996 Score = 131 bits (144), Expect = 4e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||| | ||| ||||||||||||||| ||||| | Sbjct 1470 CCACCACGAAGACGAAGGACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1411 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || |||||||||||||| || || || || ||||||||||| ||||| Sbjct 1410 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAAATGAGACGCTGTTGG---TCTGGA 1354 Query 288366 --GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||| || || || || ||| |||| |||||||| ||| ||| || || Sbjct 1353 GGGATGCCTTCCTTGTCTTGAATCTTTTGCTTG-ACGTTTTCAATACTATCAGAAGACTC 1295 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || || || ||||||||||| |||||||| Sbjct 1294 GACTTCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1244 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | |||| ||| ||||||||| || || ||||| Sbjct 1242 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 1183 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | |||||| || || ||||||| ||| |||||| || Sbjct 1182 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 1123 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || || || ||| |||| |||||||| ||| ||| || || || Sbjct 1122 ATACCTTCCTTGTCTTGAATCTTTTGCTTG-ACGTTTTCAATACTATCAGAAGACTCGAC 1064 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || || || || || || ||||||||||| |||||||| Sbjct 1063 TTCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1016 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | |||| ||| ||||||||| || || ||||| Sbjct 1926 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 1867 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | |||||| || || ||||||| ||| |||||| || Sbjct 1866 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 1807 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || || || ||| |||| |||||||| ||| ||| || || || Sbjct 1806 ATACCTTCCTTGTCTTGAATCTTTTGCTTG-ACGTTTTCAATACTATCAGAAGACTCGAC 1748 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || || || || || || ||||||||||| |||||||| Sbjct 1747 TTCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1700 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || | |||| ||| ||||||||| || || ||||| Sbjct 2154 CCGCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTC 2095 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | |||||| || || ||||||| ||| |||||| || Sbjct 2094 AAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGA 2035 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || || || ||| |||| |||||||| ||| ||| || || || Sbjct 2034 ATACCTTCCTTGTCTTGAATCTTTTGCTTG-ACGTTTTCAATACTATCAGAAGACTCGAC 1976 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || || || || || || ||||||||||| |||||||| Sbjct 1975 TTCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1928 >seq175 Length=1843 Score = 131 bits (144), Expect = 4e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||| | ||| ||||||||||||||| ||||| | Sbjct 1242 CCACCACGAAGACGAAGGACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1183 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || |||||||||||||| || || || || ||||||||||| ||||| Sbjct 1182 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAAATGAGACGCTGTTGG---TCTGGA 1126 Query 288366 --GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||| || || || || ||| |||| |||||||| ||| ||| || || Sbjct 1125 GGGATGCCTTCCTTGTCTTGAATCTTTTGCTTG-ACGTTTTCAATACTATCAGAAGACTC 1067 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || || || ||||||||||| |||||||| Sbjct 1066 GACTTCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1016 Score = 131 bits (144), Expect = 4e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||| | ||| ||||||||||||||| ||||| | Sbjct 1698 CCACCACGAAGACGAAGGACCAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAA 1639 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || |||||||||||||| || || || || ||||||||||| ||||| Sbjct 1638 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAAATGAGACGCTGTTGG---TCTGGA 1582 Query 288366 --GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||| || || || || ||| |||| |||||||| ||| ||| || || Sbjct 1581 GGGATGCCTTCCTTGTCTTGAATCTTTTGCTTG-ACGTTTTCAATACTATCAGAAGACTC 1523 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || || || ||||||||||| |||||||| Sbjct 1522 GACTTCCAAGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 1472 >seq3880 Length=130811 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | ||| || || | ||||| || ||| ||||| ||||||||||| | Sbjct 118624 CCACCTCGTAATCTTAGCACTAAATGAAGAGTTGATTCCTTTTGAATATTATAGTCACTG 118565 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || ||||||||||| || || || || ||||| |||||| | || Sbjct 118564 AGAGTACGACCATCCTCTAATTGTTTGCCAGCAAAAATGAGACGTTGTTGATCAGGAGGA 118505 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| ||||| || || ||| ||||| ||||| || ||| ||| ||||| || Sbjct 118504 ATGCCTTCCTTATCTTGAATCTTTTGCTTT-ACGTTATCGATACTATCAGAAGATTCAAC 118446 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||| | ||||| || || || || || |||||||| || || ||||| || Sbjct 118445 TTCTAAAGTGATAGTTTTACCAGTAAGGGTCTTGACAAAAATTTGCATAAT 118395 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||| ||| | || || || ||||||| |||||| || || || Sbjct 118817 TTCCTTTTGTATATTATAATCGCTTAATGTACGACCATCTTCTAGTTGTTTGCCAGCAAA 118758 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | |||||| ||| || |||||||| || || ||||| |||||| || Sbjct 118757 GATAAGTCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTCACATT 118698 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | |||| ||||| ||||| | ||||| || || || || ||||||||||| Sbjct 118697 ATCAATGGTATCGGAAGATTCAACTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGAC 118638 Query 288462 GAATATCTGCAT 288473 |||||| ||||| Sbjct 118637 GAATATTTGCAT 118626 >seq2503 Length=34491 Score = 113 bits (124), Expect = 1e-19 Identities = 174/246 (71%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTAT-GATCGG 269156 |||||||| | |||| |||| ||| | | || ||| | || ||| || |||||| Sbjct 7059 GAAGCAGTCGGTATCGAACAAGAATTCCTGTCGGATGCTCTGCC-TGTGGCATTGATCGG 7001 Query 269157 TATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGC 269216 |||||| || | ||| ||| || || |||||||| ||||||||| || | || Sbjct 7000 TATGAACGCTACCTTGATGTGTCAGTACATTGAATTCGTCGCTGATCGTCTCATGGTCGC 6941 Query 269217 ACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTC 269276 || || | ||| || | |||||| | || || |||| ||||||||| | || || Sbjct 6940 CCTTGGCTTTGACAAGATTTACAATGCCTCTAACCCATTCGACTTTATGGACATGATCTC 6881 Query 269277 GCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGT 269336 || |||| ||||| ||||| || ||||||||||| || ||||||||| ||||||| Sbjct 6880 CCTTCAAGGCAAGACCAACTTTTTTGAAAAGCGTGTTTCTGATTATCAACGTGCTGGTGT 6821 Query 269337 AATGAA 269342 ||||| Sbjct 6820 CATGAA 6815 >seq3792 Length=31585 Score = 100 bits (110), Expect = 7e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 |||| ||||||||| | | | ||| |||||| || ||||| || ||||||||| | Sbjct 6711 TGATTGGTATGAATTCTACTTTGATGTGTCAATACATTGAATTTGTTGCTGATCGTCTTA 6652 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 | || || || | || ||| | || | | | |||||| || | ||||||||| Sbjct 6651 TGGTTGCTCTTGGGTTCGATAAAATTTATATGGCAACGAATCCGTTTGACTTTATGGACA 6592 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTC 269329 | ||||| || |||| ||||| ||||| || ||||||||||| || ||||| ||| Sbjct 6591 TGATTTCACTGCAAGGGAAGACCAACTTTTTTGAAAAGCGTGTTTCTGATTATCAGCGTG 6532 Query 269330 CTGGTGTAATGAA 269342 ||||||| ||||| Sbjct 6531 CTGGTGTCATGAA 6519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179595136743438