Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2543 105 4e-18 seq2672 87.8 1e-12 seq175 87.8 1e-12 >seq2543 Length=10996 Score = 105 bits (116), Expect = 4e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||||| ||| |||||| |||||||| ||||| | || | | || |||| | Sbjct 1225 AACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAG-TACGGCCATCTT 1167 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | || ||||| || ||||| || | ||||| || || | || | || |||||||| Sbjct 1166 CGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTT 1107 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || |||||| | | || ||| | ||| || || | ||| ||||||| Sbjct 1106 GAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTT 1047 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || ||||| ||||| || || ||||||||| Sbjct 1046 TACCAGTGAGGGTCTTGACGAAAATCTGCATA 1015 Score = 105 bits (116), Expect = 4e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||||| ||| |||||| |||||||| ||||| | || | | || |||| | Sbjct 1909 AACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAG-TACGGCCATCTT 1851 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | || ||||| || ||||| || | ||||| || || | || | || |||||||| Sbjct 1850 CGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTT 1791 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || |||||| | | || ||| | ||| || || | ||| ||||||| Sbjct 1790 GAATCTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTT 1731 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || ||||| ||||| || || ||||||||| Sbjct 1730 TACCAGTGAGGGTCTTGACGAAAATCTGCATA 1699 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||||| ||| |||||| |||||||| ||||| | || | | || |||| | Sbjct 997 AACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAG-TACGGCCATCTT 939 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | || ||||| || ||||| || | ||||| || || | || | || |||||||| Sbjct 938 CGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTT 879 Query 34891 TAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || ||||| || || || ||| | || || || | || || || Sbjct 878 GAATCTTTTGCTTGAC--ATTCTCAATGCTATCAGAAGATTCGACTTCTAAAGTGATAGT 821 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || |||||||| |||||||| ||||| Sbjct 820 CTTTCCGGTAAGAGTCTTTACAAAGATTTGCAT 788 >seq2672 Length=76086 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| ||||| |||||||| |||| | || |||| |||| ||||| || ||||| Sbjct 17879 TTCTTTTTGAATATTATAGTCACTAAGGGTACGGCCATCTTCCAATTGTTTGCCTGCAAA 17938 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||| || ||| | || | || || || || ||||| || || ||| Sbjct 17939 GATGAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGATCTTTTGCTTTACGTT 17998 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || ||| | ||||| || | || || ||||| || || ||||||||||| Sbjct 17999 GTCAATACTATCAGAAGATTCAACTTCCAAAGTAATAGTTTTACCAGTAAGAGTCTTCAC 18058 Query 34970 AAAGATCTGCATA 34982 |||||| |||||| Sbjct 18059 AAAGATTTGCATA 18071 >seq175 Length=1843 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||||| ||| |||||| |||||||| ||||| | || | | || |||| | Sbjct 997 AACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACTCAAAG-TACGGCCATCTT 939 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | || ||||| || ||||| || | ||||| || || | || | || |||||||| Sbjct 938 CGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTT 879 Query 34891 TAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || ||||| || || || ||| | || || || | || || || Sbjct 878 GAATCTTTTGCTTGAC--ATTCTCAATGCTATCAGAAGATTCGACTTCTAAAGTGATAGT 821 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || |||||||| |||||||| ||||| Sbjct 820 CTTTCCGGTAAGAGTCTTTACAAAGATTTGCAT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324618086673288