Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3799 253 2e-62 seq3792 226 3e-54 seq2503 114 1e-20 seq3903 96.9 4e-15 >seq3799 Length=82858 Score = 253 bits (280), Expect = 2e-62 Identities = 638/962 (66%), Gaps = 12/962 (1%) Strand=Plus/Minus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 || ||||| || | ||||| ||||| || |||| || | ||||||| | ||||| Sbjct 43801 GCGATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGGCTTGTATATTCGACAATTTCC 43742 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 | ||| || |||| |||||| || |||||||| ||||| || || | | ||||| Sbjct 43741 GTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGTTGGTTGCTCTTTCTATTACAA 43682 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || |||||||| |||||||| || | || ||||| | || | ||| | ||||| | | Sbjct 43681 GCATCCTTGTAGAGCATAAACGGGTTACCGGTTTCAGTTTGTGCTTCCAAGATAGCATAC 43622 Query 48060 CA-AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTA--TTTAGTA 48116 || ||| | | ||||| || |||| ||| | || |||| || ||| || Sbjct 43621 CATAACTTTTGT-GCCTTAATTGTCTCTCTCGCTCTTCCTTCGCGTTCATAGCTTTCATA 43563 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 | | || | ||| ||||| || | |||| | || ||||| |||||||||||| Sbjct 43562 AAGAGCTAC--AAACTCATCACCCCAAACATCTTGCAAACCAGGTGCTTCATTAGGACAA 43505 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | | ||||||||| || | | || || | ||| || | ||| |||| |||||| Sbjct 43504 AAGAGAGACCAATCCCCACCGTCCTTGACACGTTGCATGAAGAGATCGGGTACCCAAAGG 43445 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| | | ||| | ||| || || ||| ||| || | | || | | Sbjct 43444 GCATAAAACAAATCACGGGCTCTGATTTCATCCTTACCAAAGTTCTTTCTTAAATCTAAA 43385 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 ||| | ||||| ||||||||||| || | ||| || || | | || || || || Sbjct 43384 AAGGTAAAGATATCCGCATGCCATGGCTCAAGATACATGGCGAAGGCTCCCGGACGCTTG 43325 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || || |||||||| | ||| | || || || || | || | | ||| || | | | Sbjct 43324 TTGCCACCTTGATCGACATAACGTGCTGTGTTATTGAACACACGCAGCATGGGAAGCAAA 43265 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 ||||| || |||||| || || | |||||| |||| | || | ||||| ||| Sbjct 43264 CCATTCGAATAACCATTTGTACCGGCAATATAGGATCCATTGGCACGAATATTGTGAATG 43205 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | ||| ||||||||||| |||| || ||| | ||||| ||| | || ||||| Sbjct 43204 TTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTTAATGTTTCATAG 43145 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| || ||| || |||| | | | || ||| ||||| || ||| || Sbjct 43144 ATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGACATCTGAGGACGA 43085 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || || | ||| || || || ||| |||||| |||| ||||||| || | ||| Sbjct 43084 GGTGTACCGGCATTGAACAAAGTGGGACTGGCATGAGTAAAGAATTTCTCAGACATCAAG 43025 Query 48657 TTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCAT 48715 || || || ||||| ||| || ||||| || | || ||||| |||| |||||||| Sbjct 43024 TTGTAAGTCTCAATTGCAGCGTCAATATCTTCACCG-TGGATACCAATAGCGACACGCAT 42966 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 | | || |||||| | || || | ||| | || || | ||||| ||| ||| Sbjct 42965 GATAAGATGTTGAGGACGCTCGGCAGTCTTGCCGTCAATCTTGAGTAGATAGGATCGTTC 42906 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTATCATTAATAATTGATGAA 48833 | || || || |||||| ||||||| ||||| || | |||| |||||| | ||| Sbjct 42905 GAGAGTCTTGAATCCAAAAAAGTTGTACTTGAAA--TCTCTGTCATAAATAATGGCTGAG 42848 Query 48834 TT 48835 || Sbjct 42847 TT 42846 Score = 109 bits (120), Expect = 6e-19 Identities = 523/833 (63%), Gaps = 15/833 (2%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATT-ACTCGCTGATTTTGTTCGTAAATAATACATACCAGT 47035 || || |||||||| |||| || ||| || | ||| || |||||||||||||| || Sbjct 44768 TCTACTGTAAACTTGATTGCATCCACT-GCAGGACGTGTACGCAAATAATACATACCCGT 44710 Query 47036 CTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTC 47095 ||| || || ||| ||||| || |||||||| || | ||| | | | ||||| Sbjct 44709 CTTCAATCCCTTTTGCCAGCCATAAAAGTGCATACTTGTCAGCTTACCAAAGTTGGGTTC 44650 Query 47096 TGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCAT 47155 | |||| || || | | |||||| |||||||| | || || | ||||| ||||| Sbjct 44649 AGCAATAAAGATGTTCAAACTTTGACTTTGATCAATGTAGGCGCCACGGTCAGCGGCCAT 44590 Query 47156 ATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTC 47215 ||| | ||| | || | || ||||| || || || || | || ||| | || || Sbjct 44589 ATCAACAATTGTACGCTGAGAGATTTCCCAGACAGTCTTGTAGAGTTCTTTGAGGTGTTG 44530 Query 47216 TGGGAGATTAGT---ATTTTGAATAGATCCTCCgttttctataattttgttttttaattc 47272 |||| | | |||||| | ||| || || | | || || |||| || | ||| Sbjct 44529 AGGGATTGTGGGTACATTTTGGACAGACCCACCATCGGCCATGATCATGTTCTTGACTTC 44470 Query 47273 atttgaccaaagt----tttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 || ||||| | || || | | | | | | ||| || || |||| Sbjct 44469 ATCGTTCCAAATACCCATATCAACCAAATCACGAAGTAACCA----AGGGTTGACCATTT 44414 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 || |||| || || || || | |||| |||| | ||| || || || || | | | | Sbjct 44413 GATATTCACCCGAGAGCACACGACGGGTATAAAAGTTAGAAGTGTAAGGCTCAAAACACT 44354 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 |||| || || ||||||| || || || |||||||| | || | || | || Sbjct 44353 CATTGAAACCCAACATTTGAGAGGTAGAGGCGGTAGGCATAGGGGCTAACAAAAGTGAAT 44294 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508 | | || || | || ||||| ||| ||||||||| | | Sbjct 44293 TGCGAACGCCGTGCTTGGCTATCTTTTCCTTTAGTGAAGCCCAGTCCCAAAGAGAGGTGG 44234 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 | |||||||| | || ||||| | || || || || ||| ||| | ||| | Sbjct 44233 GTGTCACATTCCACATGTCGTATTGTAAGATGCCCTTGGATACAGGACTACCTTCATAAG 44174 Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 ||| |||||| ||||| || || | ||| || |||||||||||| || ||| | Sbjct 44173 TTTCATAAGGTCCGTACTTTTCGGCCAATTCGCATGAGGCTTCCAATGCAGCATGATAGA 44114 Query 47629 TTGTTTCAAATATTTTTATGTTTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNN 47687 | |||||||| |||| || |||| ||| || ||||| | || ||||| || || Sbjct 44113 TAGTTTCAAAGATTTGAATATTTA-ATTGTTTGGCTTCAGGAGAGTCAAAGGGGTAACGT 44055 Query 47688 NNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTA 47747 ||||| ||||| || ||||| ||||| | ||| || || | ||| | || Sbjct 44054 AAGGCCATGAATGTGTCTGCTAAACCTTGGACACCTAAACCGATAGGACGATGTCTCTTG 43995 Query 47748 TTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800 || || || ||||| | || || | ||| ||||| ||||| || || Sbjct 43994 TTTGATCTTTCTGCTTCAATGACAGGGTAATAGTTGATATCAATAATCTTGTT 43942 >seq3792 Length=31585 Score = 226 bits (250), Expect = 3e-54 Identities = 349/495 (71%), Gaps = 5/495 (1%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TC 18731 ||||| || | ||| | |||||||| || || || || || | | ||| || ||| || Sbjct 6537 TGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTGCAGTGAAAT-CATGTC 6595 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAG 18791 |||||| ||||| ||||| || | |||| ||||| | ||| || | | | | || Sbjct 6596 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCATAAG 6655 Query 18792 TCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 | ||| || ||||||| ||| ||| ||||| | | ||||||| || || ||| Sbjct 6656 ACGATCAGCAACAAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGC 6715 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGA 18911 |||||||| |||||| || | ||||| ||||| ||| ||| || || ||||||| Sbjct 6716 AACAGGTAATGCATCAGTTAAGAATTCCTGTTCAATACCTACAGCTTCCATTATAATATC 6775 Query 18912 TACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATC 18971 || | | || |||| | | ||| || |||||| | ||| |||||||| Sbjct 6776 CTTCACACGTTGTTGGCTAGGTTGTTTACGAATGTGAGTAAACAAAAGACAAGCAAAATC 6835 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 ||| || || ||||| | || |||||||||||| ||| || ||||| ||||||| Sbjct 6836 CGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCATCAA 6895 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091 || | ||| || | ||| || ||||| |||||||| ||||||||||||||||||||||| Sbjct 6896 ACCACGTTTCTTAAGCCAAAAGATAGAGGCAAATGAGCCAGAAAAGAATATACCTTCTAC 6955 Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAG 19151 ||| ||||||||||| || | || || | | ||||||| | ||||||||| | Sbjct 6956 TGCAGCAAAAGCAACAAGACGCTCAGCAAA---TGAATCATTAGCAGAAATCCATTTGAA 7012 Query 19152 TGCCCAATCAGCCTT 19166 ||||| |||||||| Sbjct 7013 AGCCCAGTCAGCCTT 7027 Score = 154 bits (170), Expect = 2e-32 Identities = 208/283 (73%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||| | ||| | ||| ||||| | |||||| |||| || || |||||||| || Sbjct 7143 ATCTTTTATATAGGTATCAATCAAAAGACTGTATGTTTCAGAGTGGATATTTTCAATCAT 7202 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 || ||||| || ||||||||| | ||||| | || | |||||| |||||| ||| Sbjct 7203 GATTTGAAAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAATTTTG 7262 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCT-GCAAAAAATGCTAATACATGTTTAA 19402 |||||||||||||| || || |||||| |||| ||||| || || || ||| | || Sbjct 7263 CACCAAATTTTCATTTACAATACCATCA-GAGCTCGCAAAGAAAGCCAAAACACGAGAAA 7321 Query 19403 TAAAATGTTTTTCA-TCTGAG-GTTAATGTATT-CCAATCATTAATATCTTTAGATAAAT 19459 ||||| | ||| ||| || | ||| || ||||||||| ||| || ||||| Sbjct 7322 TAAAAAATCGCTCATTCTCAGTCATTTTGTTTTCCCAATCATTTTGGTCTCTACTTAAAT 7381 Query 19460 CTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 ||| ||||||| ||||||||||||| || ||||| || ||||| Sbjct 7382 CTATTTCTTCAGCTGTCCAAAAAGATGCTTCTGCCTTCTTATA 7424 >seq2503 Length=34491 Score = 114 bits (126), Expect = 1e-20 Identities = 326/497 (66%), Gaps = 7/497 (1%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-T 18730 |||||| || | ||| | |||||||| || || || || || | | || || ||| | Sbjct 6832 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGAT-CATGT 6890 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 ||||||| || ||||| || |||| || || || | || || | | | | | Sbjct 6891 CCATAAAGTCGAATGGGTTAGAGGCATTGTAAATCTTGTCAAAGCCAAGGGCGACCATGA 6950 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 | | ||| || || |||| ||| || ||||| | ||||| || || ||| Sbjct 6951 GACGATCAGCGACGAATTCAATGTACTGACACATCAAGGTAGCGTTCATACCGATCAATG 7010 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910 ||||| || ||||| | || ||||||||||| ||| ||||| ||| ||||| Sbjct 7011 CCACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACTGCTTCTACAATAATGT 7070 Query 18911 ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAAT 18970 || | | || | | || | | | | || | |||| | ||| ||||||| Sbjct 7071 CCTTGACGCGTTGTTGACTGGGTTGTTTGCGGATGTGGGTGAACAAGAGACAGGCAAAAT 7130 Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 | || || || ||||| | || |||||||||||| || || ||||| ||||||| Sbjct 7131 CGGTGTGAAGACCTTCGTCACGACAGATCAATTCATTACTGAACGTCAAACCGGGCATCA 7190 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 || | ||| |||||||| || || || || ||||| || |||||||| || ||||| | Sbjct 7191 AACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAACCGGAAAAGAAGATGCCTTCGA 7250 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTC 19149 | || ||||| || || || | ||| || || || | |||| |||||||| Sbjct 7251 CAGCGGCAAAGGCGACCAGACGTTCAGCA----AAGGATTCGTTGGATGAGATCCATTTG 7306 Query 19150 AGTGCCCAATCAGCCTT 19166 | |||||||| ||||| Sbjct 7307 AAAGCCCAATCGGCCTT 7323 >seq3903 Length=141833 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/186 (73%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 47019 AAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT 47078 ||||| ||||| || |||||||| ||| |||| |||||||||||||| ||| || Sbjct 12122 AAATAGTACATGCCCGTCTTTAATCCTTTCTTCCAAGCATAGAAATGCATAGAAGTCAAC 12063 Query 47079 TTAGAATAACTAGGTTCTGAAATATGAATA--TTAAGAGATTGACTCTGATCAATAAATG 47136 || |||||||||| | | | ||||| || | |||||| |||||||||| | | Sbjct 12062 TTTCCGAAACTAGGTTCGGCAGT--GAATAAGTTCATCGATTGAGACTGATCAATATAGG 12005 Query 47137 CACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTAT 47196 |||| | |||||||||||||| | ||| ||||| | || ||||| || || || | Sbjct 12004 CACCACGGTCAGCTGCCATATCAATAATGGTTCTTTGCGAAATTTCCCACACAGTCTTGT 11945 Query 47197 A-AATT 47201 | |||| Sbjct 11944 ACAATT 11939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562081249642440