Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3792 179 4e-40 seq2503 98.7 1e-15 >seq3792 Length=31585 Score = 179 bits (198), Expect = 4e-40 Identities = 392/576 (68%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 36819 TTCATTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTAT---TACTATTCATA 36875 ||| ||||||||||||| |||| || || |||||| | || | | | ||||| Sbjct 6465 TTCTTTTTTTAAAAATCAGCATCCAAAGTGAATTTTTTCTCAACAGGGGTCTTGTTCATG 6524 Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 || || ||||| || ||| || |||| ||||| || ||||| |||| ||| Sbjct 6525 ACACCAGCACGCTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTGCAGT 6584 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTA-CTA---CATGA 36991 || || | |||||||| ||||| ||||| | || |||| || || | | || || Sbjct 6585 GAAATCATGTCCATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGA 6644 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 | | | ||| | ||| ||||||||||| ||||||| |||||| | | | || Sbjct 6645 GCAACCAT----AAGACGATCAGCAACAAATTCAATGTATTGACACATCAAAGTAGAATT 6700 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAG 37110 |||||||| | | || || | |||||| | ||||| | | || | || ||||| Sbjct 6701 CATACCAATCAATGCAACAGGTAATGCATCAGTTAAGAATTCCTGTT-CAATACCTACAG 6759 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGG-GATATTTTA--AATATT--T 37165 | || | |||| || | | || || ||||| | | |||| ||| | | Sbjct 6760 CTTCCAT---TATAATATCCTTCACACGTT--GTTGGCTAGGTTGTTTACGAATGTGAGT 6814 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||||| | ||| |||||||| ||| | |||||| || | || |||||||||||| Sbjct 6815 AAACAAAAGACAAGCAAAATCCGTATGAAGACCTTCGTCACGACAAATCAATTCATTACT 6874 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || || || ||||| ||||| | ||| |||| |||||| || | ||||| || || Sbjct 6875 AAAAGTCAAACCGGGCATCAAACCACGTTTCTTAAGCCAAAAGATAGAGGCAAATGAGCC 6934 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 ||||||||| |||||||| ||||| ||||| || |||||||| | | || |||| Sbjct 6935 AGAAAAGAATATACCTTCTACTGCAGCAAAAGCAACAAGACGCTCAGCAAA---TGAATC 6991 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTT 37381 || | ||||||||||||| | ||| || ||||| Sbjct 6992 ATTAGCAGAAATCCATTTGAAAGCCCAGTCAGCCTT 7027 Score = 132 bits (146), Expect = 6e-26 Identities = 213/303 (70%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 37399 TTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAA 37458 |||| ||||| || || || | | |||||||||| |||| ||||||| ||||||| Sbjct 7103 TTGTATCAATAGCAGAGAAAAGCATTTCTTTTTCTTCATCATCTTTTATATAGGTATCAA 7162 Query 37459 TTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAAC 37518 | | | ||| || |||||||||| ||||||||||| || ||||| |||||||||| Sbjct 7163 TCAAAAGACTGTATGTTTCAGAGTGGATATTTTCAATCATGATTTGAAAGCCATAAAAAC 7222 Query 37519 ACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTA 37578 | ||||||||| | || || || | | |||| | | | || |||||||| || | Sbjct 7223 ATTTAGCTTCAGGAATTTTGACTTCATCACAAAAATTTTGCACCAAATTTTCATTTACAA 7282 Query 37579 TCCCATCACTAGCT-GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCA 37634 | |||||| |||| ||||||||||| | |||| |||||| || ||| ||| Sbjct 7283 TACCATCA-GAGCTCGCAAAGAAAGCCAAAACACGAGAAATAAAAAATCGCTCATTCTCA 7341 Query 37635 TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAA 37694 | | |||| ||||||||| ||| | |||||| | ||| ||| | |||||| Sbjct 7342 GTCATTTTGTTTTCCCAATCATTTTGGTCTCTACTTAAATCTATTTCTTCAGCTGTCCAA 7401 Query 37695 AAA 37697 ||| Sbjct 7402 AAA 7404 >seq2503 Length=34491 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 ||||| | ||| |||||||| || | |||||| || | || |||||||||||| Sbjct 7112 AACAAGAGACAGGCAAAATCGGTGTGAAGACCTTCGTCACGACAGATCAATTCATTACTG 7171 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || || || ||||| ||||| | ||| || | |||||| || | || || || || Sbjct 7172 AACGTCAAACCGGGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAACCG 7231 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGT 37328 |||||||| || ||||| || || ||||| || || |||||| Sbjct 7232 GAAAAGAAGATGCCTTCGACAGCGGCAAAGGCGACCAGACGT 7273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592287769072840