Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2672 113 4e-20 seq3880 102 7e-17 seq3785 82.4 6e-11 >seq2672 Length=76086 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || |||||||| ||||| ||| ||| |||| Sbjct 18070 ATGCAAATCTTTGTGAAGACTCTTACTGGTAAAACTATTACTTTGGAAGTTGAATCTTCT 18011 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | | |||||||| ||| || ||||| || | || ||||||| Sbjct 18010 GATAGTATTGACAACGTAAAGCAAAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAA 17951 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || |||||||| |||||||||||||||||| || | || ||||| Sbjct 17950 CAACGTCTCATCTTTGCAGGCAAACAATTGGAAGATGGCCGTACCCTTAGTGACTATAAT 17891 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| || || || ||||| ||||| ||||||| || || Sbjct 17890 ATTCAAAAAGAATCAACCCTTCATCTGGTACTAAGACTACGAGGTGGTAT 17841 >seq3880 Length=130811 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| || || || | || || ||||| || || ||| ||| |||| Sbjct 118626 ATGCAAATATTCGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 118685 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||||| |||||||| || | || ||||||| Sbjct 118686 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 118745 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || |||||||||||||| ||||||||| | |||||| || | | || | |||||||| Sbjct 118746 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAG--CGATTATA 118803 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | || ||||| ||||| || || || |||||||| | ||| |||| || Sbjct 118804 ATATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGG 118852 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || |||||||| || || ||| ||| |||| Sbjct 118398 ATGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 118457 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | |||||||| || || || || || | || |||||| Sbjct 118458 GATAGTATCGATAACGTAAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCTGATCAA 118517 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || ||||| ||||||||||| || ||| | ||| | || ||||| Sbjct 118518 CAACGTCTCATTTTTGCTGGCAAACAATTAGAGGATGGTCGTACTCTCAGTGACTATAAT 118577 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| ||||| || | || ||||||||||||| || || Sbjct 118578 ATTCAAAAGGAATCAACTCTTCATTTAGTGCTAAGATTACGAGGTGGTAT 118627 >seq3785 Length=127354 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 || ||||| | ||||||||||| || || |||||||||||| | ||| || |||| Sbjct 87409 GACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTGAGCGAT 87350 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||||||||| ||||| ||||| ||| |||| Sbjct 87349 TACAACATTCAAAAGGAATCCACTCTTCACTTGGT 87315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425384471101059