Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3903 129 3e-25 seq3799 104 1e-17 >seq3903 Length=141833 Score = 129 bits (142), Expect = 3e-25 Identities = 269/401 (67%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 25962 AAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAAT 26021 |||| ||||| | || | ||||||||| || | || ||| | | |||||| || | Sbjct 10723 AAAACAAATCGCGAGCACGCATTTCTTCGGCACCATTGTTTTTTCTCAAATCTAAAAAGT 10664 Query 26022 CAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTC 26081 |||| | ||| ||||| || || || || || |||||| | || || | ||| || | Sbjct 10663 CAAAGACATCCACATGCCAAGGCTCCAAGTACATGGCAAAATTTCCATTGCGTTTACCAC 10604 Query 26082 CACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAG 26141 ||||||| ||| | | |||||| ||||| |||||| ||| ||| |||| || ||| Sbjct 10603 CACCTTGGGTTACAAAACGTGCAGTATCATTAAAAACTCTCAGCATAGGAATTACACCAT 10544 Query 26142 TTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAA 26201 | ||| ||||| || | | ||| | || |||| | ||| | || ||| || Sbjct 10543 TAGAAGTACCGTTGGTTCCAGCAATGTAAGAGCCTGAGCCACGAATTTTTTGTGCAGCAA 10484 Query 26202 TACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTC 26261 ||| | |||||||| |||||| ||| |||||| | | ||||||| | || | Sbjct 10483 CACCTACGCCACCAGCTGCTTTTGATATACGTGCACAGGTGGTGAGTGTATCGTAGATAC 10424 Query 26262 CTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTG 26321 ||| || ||||| | |||| | ||| |||||| ||| | || | | || Sbjct 10423 CTTCAATACTATCTTCGCGCATTTGAACTAAGAAACAACTAGAGAGCTGAGGTCTGGGTG 10364 Query 26322 TTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | || | |||||| || || ||||||||||||||| | ||| Sbjct 10363 TACCAGCATTAAACAAGGTAGGTGTAGCATGAGTAAAGTAT 10323 >seq3799 Length=82858 Score = 104 bits (114), Expect = 1e-17 Identities = 283/427 (66%), Gaps = 6/427 (1%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || | ||| || | ||| | |||||||| ||||| | ||||| ||||| || || Sbjct 43469 CATGAAGAGATCGGGTACCCAAAGGGCATAAAACAAATCACGGGCTCTGATTTCATCCTT 43410 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || |||||| ||| |||||| || ||| ||||| | |||||||| || | ||| Sbjct 43409 ACCAAAGTTCTTTCTTAAATCTAAAAAGGTAAAGATATCCGCATGCCATGGCTCAAGATA 43350 Query 26053 GATAGCAAAA-CTACCTTTT-CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110 || || || || || ||| || | |||||||||| || || | ||| || | | Sbjct 43349 CATGGCGAAGGCTCCCGGACGCTTGTTGC--CACCTTGATCGACATAACGTGCTGTGTTA 43292 Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTG 26170 ||||| || || ||| |||| || ||| | ||| | || ||||| | ||| | | Sbjct 43291 TTGAACACACGCAGCATGGGAAGCAAACCATTCGAATAACCATTTGTACCGGCAATATAG 43232 Query 26171 GATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATA 26230 ||||| | | | ||||| |||| | | |||||| ||||| || ||| ||||| Sbjct 43231 GATCCATTGGCACGAATATTGTGAATGTTGAGACCGATACCACCTGCAGTTTTCGAAATT 43172 Query 26231 GCTGCACA-ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAA 26289 ||||| || | || ||| || | || |||| || ||| | ||||| | Sbjct 43171 TGGGCACAGATTTTTAA-TGTTTCATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAG 43113 Query 26290 TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349 || || ||||| || | || | | ||| ||| || | ||| || || || || | || Sbjct 43112 CAAGAAGCAAGAGGACATCTGAGGACGAGGTGTACCGGCATTGAACAAAGTGGGACTGGC 43053 Query 26350 ATGAGTA 26356 ||||||| Sbjct 43052 ATGAGTA 43046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253027907930075