Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2672 152 8e-32 seq3880 140 5e-28 seq3789 129 9e-25 seq2543 113 7e-20 seq175 113 7e-20 seq3792 111 2e-19 >seq2672 Length=76086 Score = 152 bits (168), Expect = 8e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || || || || || ||||||||||| ||| || Sbjct 17842 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 17783 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||||| ||||| |||||||| ||||| || || ||||| || Sbjct 17782 GATACTATTGATAATGTGAAAAGCAAAATTCAAGATAAGGAAGGTATCCCACCAGATCAG 17723 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| ||||| || || |||||| | |||||| ||||| ||| Sbjct 17722 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAAGTGATTACAAT 17663 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| ||||| | ||||||||||| || ||| | |||||||| || Sbjct 17662 ATACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGG 17616 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| ||||||||||| || ||||| ||| |||| Sbjct 18070 ATGCAAATCTTTGTGAAGACTCTTACTGGTAAAACTATTACTTTGGAAGTTGAATCTTCT 18011 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || | || || |||||||||||||| || || ||||| ||| Sbjct 18010 GATAGTATTGACAACGTAAAGCAAAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAA 17951 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || || || | |||||| | | || | || |||||| Sbjct 17950 CAACGTCTCATCTTTGCAGGCAAACAATTGGAAGATGGCCGTACCCTTAGTGACTATAAT 17891 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || |||||| | || ||||| || |||| ||| Sbjct 17890 ATTCAAAAAGAATCAACCCTTCATCTGGTACTAAGACTACGAGGTGGT 17843 >seq3880 Length=130811 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | || || | || || ||||| || ||||||||||| ||| ||| Sbjct 118626 ATGCAAATATTCGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 118685 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 118686 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 118745 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| || || || || |||||| | || ||| ||||||||| Sbjct 118746 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAGCGATTATAAT 118805 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || || | || || ||||| || ||| | |||||||| || Sbjct 118806 ATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGG 118852 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| |||||||| || |||||||| ||| |||| Sbjct 118398 ATGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 118457 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || | || || |||||||| |||||||| ||||| || ||| Sbjct 118458 GATAGTATCGATAACGTAAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCTGATCAA 118517 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || || || | || ||| | ||| | || |||||| Sbjct 118518 CAACGTCTCATTTTTGCTGGCAAACAATTAGAGGATGGTCGTACTCTCAGTGACTATAAT 118577 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || |||| | | || |||||||||||| |||||||| |||| ||| Sbjct 118578 AT-TCAAAAGGAATCAACTCTTCATTTAGTGCTAAGATTACGAGGTGGT 118625 >seq3789 Length=135228 Score = 129 bits (142), Expect = 9e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 |||||||||||| ||| |||||||| | ||||| || || || || || || |||||| Sbjct 104402 TAAAATGCAAATCTTTGTTAAAACACTTACTGGCAAGACAATCACTTTGGAGGTCGAATC 104461 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||||||| |||| || || || | ||||| ||||| || ||||| || ||||| || Sbjct 104462 CTCTGATAGTATTGAGAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTGA 104521 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTT 155989 |||||| | ||||| | ||| ||||||||||| |||||| | | ||||| Sbjct 104522 TCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACTTT 104572 >seq2543 Length=10996 Score = 113 bits (124), Expect = 7e-20 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 155818 ATAAA--ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA 155875 ||||| |||||||| ||| | || || | || ||||| ||||| || ||||||||||| Sbjct 781 ATAAAGCATGCAAATCTTTGTAAAGACTCTTACCGGAAAGACTATCACTTTAGAAGTCGA 840 Query 155876 AGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCC 155935 | |||||||| ||| || || || | || || ||||| || ||||| || ||||| Sbjct 841 ATCTTCTGATAGCATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCC 900 Query 155936 AGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTT 155989 || |||||| | ||||| | ||| ||||| || ||||||||| | | ||||| Sbjct 901 CGATCAACAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTT 954 >seq175 Length=1843 Score = 113 bits (124), Expect = 7e-20 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 155818 ATAAA--ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA 155875 ||||| |||||||| ||| | || || | || ||||| ||||| || ||||||||||| Sbjct 781 ATAAAGCATGCAAATCTTTGTAAAGACTCTTACCGGAAAGACTATCACTTTAGAAGTCGA 840 Query 155876 AGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCC 155935 | |||||||| ||| || || || | || || ||||| || ||||| || ||||| Sbjct 841 ATCTTCTGATAGCATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCC 900 Query 155936 AGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTT 155989 || |||||| | ||||| | ||| ||||| || ||||||||| | | ||||| Sbjct 901 CGATCAACAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTT 954 >seq3792 Length=31585 Score = 111 bits (122), Expect = 2e-19 Identities = 273/408 (67%), Gaps = 11/408 (3%) Strand=Plus/Plus Query 17885 TTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTA 17944 || || || || || ||||| |||| || ||| || | | |||||| ||||| ||||| Sbjct 6555 TTTTCAAAAAAGTTGGTCTTCCCTTGCAGTGAAATCATGTCCATAAAGTCAAACGGATTC 6614 Query 17945 GTGGTTTTATAATATTTTTCTTGTATTAATTCGTATA-ATAAT-CTATCTGCTACAAATT 18002 || | ||||| ||| || | | | | | |||| | ||| || ||||||| Sbjct 6615 GTTGCCATATAAATTTTATC--GAACCCAAGAGCAACCATAAGACGATCAGCAACAAATT 6672 Query 18003 CGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAA 18062 | | ||||| |||||||| |||||||||| | | | | ||||| |||||| Sbjct 6673 CAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGCAACAGGTAATGCATCAG 6732 Query 18063 TAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTG 18122 | | ||||| | || || | |||| || |||| || | | || | | | ||| Sbjct 6733 TTAAGAATTCCTGTTCAATACCTACAGCTTCCATTATAATATCCTTCACAC--GTTGTTG 6790 Query 18123 GCAA--TTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACC 18180 || | || ||| |||||| || | || | ||| |||||||| || || | ||| Sbjct 6791 GCTAGGTTGTTTACGAATGTGAGTAAAC---AAAAGACAAGCAAAATCCGTATGAAGACC 6847 Query 18181 TTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttt 18240 ||| || | | || ||||| |||||||| || || |||||||| | ||| | ||| || Sbjct 6848 TTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCATCAAACCACGTTTCTT 6907 Query 18241 tAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC 18288 |||||||| || || || || | ||||||||||||||| || || Sbjct 6908 AAGCCAAAAGATAGAGGCAAATGAGCCAGAAAAGAATATACCTTCTAC 6955 Score = 104 bits (114), Expect = 3e-17 Identities = 201/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 18407 TCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGT 18466 |||||||||| |||||||||||| || || || || | | || ||||||| || Sbjct 7129 TCTTTTTCTTCATCATCTTTTATATAGGTATCAATCAAAAGACTGTATGTTTCAGAGTGG 7188 Query 18467 ATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATATTGAATCTC 18525 || |||| || || ||||| | |||||| || |||| || || || |||| | || Sbjct 7189 ATATTTTCAATCATGATTTGAAAGCCATAAAAACATTTAGCTTCAGGAATTTTGACT-TC 7247 Query 18526 GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT-GCGAAAAATG 18584 | |||| ||| |||||||| ||||| || ||||| |||| || | || || || | Sbjct 7248 ATCACAAAAATTTTGCACCAAATTTTCATTTACAATACCATCAG-AGCTCGCAAAGAAAG 7306 Query 18585 CCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT---CCATTCATCTA 18641 |||||||| ||| ||| | ||||| || | | ||||| ||| |||| | Sbjct 7307 CCAAAACACGAGAAATAAAAAATCGCTCATTCTCAGTCATTTTGTTTTCCCAATCATTTT 7366 Query 18642 TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 ||| | || ||| | |||||| | |||||||||||||| ||| |||| Sbjct 7367 GGTCTCTACTTAAATCTATTTCTTCAGCTGTCCAAAAAGATGCTTCTGCCT 7417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731836129123600