Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3302 159 1e-33 seq3799 152 2e-31 seq3687 136 1e-26 seq2423 127 6e-24 seq3060 87.8 5e-12 >seq3302 Length=91388 Score = 159 bits (176), Expect = 1e-33 Identities = 231/323 (72%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||| | ||||||||||||||| | ||||| | ||| |||| ||| | | | || | Sbjct 57496 TTTACCGATAGCATCAATTTCGTCTACAAAAATAATACAAGGAGCATTCTTTTTAGCTGT 57555 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||||| ||||| ||||| || | ||||| ||||||| |||||||||||||||| || Sbjct 57556 AGCAAATAAGTCTCTAACACGAGAAGATCCAACACCAACAAACATTTCTACAAATTCTGA 57615 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | | || || | ||| | |||| ||||| |||||| ||| | |||| || || Sbjct 57616 ACCAGAAACACTCAAGAAAGGTACACCAGCTTCACCTGCTGTAGCCTTTGCCAAGAGGGT 57675 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCCAGC 289262 |||||| || |||||||||| || | |||| | ||||| || | |||| ||| Sbjct 57676 CTTACCAGTACCAGGTGGTC---CTGAAAGAATGGCGCCCTTAGGGATGGTTGCACCA-- 57730 Query 289263 AGAC--TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 |||| | || ||| || |||| ||||||| |||| |||| || ||| | ||| Sbjct 57731 AGACGTTCGTAAACCTCGGGATTCTTCAAAAATTTAACAAATTCCATAATTTCCTCTTTG 57790 Query 289321 GCCTCATCACATCCTGCTACATC 289343 || || || ||| || ||||| Sbjct 57791 GCTTCGTCTGCTCCAGCAACATC 57813 >seq3799 Length=82858 Score = 152 bits (168), Expect = 2e-31 Identities = 332/492 (67%), Gaps = 9/492 (2%) Strand=Plus/Minus Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA-CTACC--ATTCCTCTTGCCACCC 156068 ||||| | ||| |||||| |||||||| || || || || | | | |||||||| Sbjct 43375 ATATCCGCATGCCATGGCTCAAGATACATGGCGAAGGCTCCCGGACGCTTGTTGCCACCT 43316 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 ||||| ||||| || || || |||||||| |||| ||||| |||| | |||||| ||| Sbjct 43315 TGATCGACATAACGTGCTGTGTTATTGAACACACGCAGCATGGGAAGCAAACCATTCGAA 43256 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 ||||| || ||| ||||| || ||| | |||| ||| ||||| | || || Sbjct 43255 TAACCATTTGTACCGGCAATATAGGATCCATTGGCACGAATATTGTGAATGTTGAGACCG 43196 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 |||||||||| ||| |||||||| || || |||| || | | || |||||| Sbjct 43195 ATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTTAATGTTTCATAGATGCCTTCA 43136 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 || ||||| || | ||| | || | |||| || | ||||| || ||||| || Sbjct 43135 ATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGACATCTGAGGACGAGGTGTACCG 43076 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTC 156368 || ||||| | || || | |||||| |||| | || | |||||| | | ||| ||| Sbjct 43075 GCATTGAACAAAGTGGGACTGGCATGAGTAAAGAATTTCTCAGACATCAAGTTGTAAGTC 43016 Query 156369 TCCTTAAT--CTTC-TCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATA 156425 || ||| | | |||| || ||||| |||| |||| ||| | ||| | | Sbjct 43015 TC---AATTGCAGCGTCAATATCTTCACCGTGGATACCAATAGCGACACGCATGATAAGA 42959 Query 156426 TGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTT 156485 || ||||||||||| || || || ||||| || || || | ||||| ||||| Sbjct 42958 TGTTGAGGACGCTCGGCAGTCTTGCCGTCAATCTTGAGTAGATAGGATCGTTCGAGAGTC 42899 Query 156486 TTAAACCCGAAA 156497 || || || ||| Sbjct 42898 TTGAATCCAAAA 42887 >seq3687 Length=248826 Score = 136 bits (150), Expect = 1e-26 Identities = 227/326 (70%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||||| ||||||| | ||| | ||||||||||||||| |||||||| Sbjct 178408 ATCATACTTAACCATAACATCTTCCAAAGCCTTTACTAAACGACGCTGAATGTAACCAGT 178467 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || |||||||||||||| ||||| |||||||||||||||| |||||||| Sbjct 178468 TTCGGCAGTCTTAACAGCTGTATCAATAAGACCTTCACGACCACCCATAGCGTGGAAGAA 178527 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| || || || | | | | || | ||||| |||||||| || || Sbjct 178528 AAATTCTGTGGGAGTTAAACCTCTCAAATAAGAATTTTCAACAAAACCACGACTTTCTGG 178587 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 | ||| || | |||||| |||| || | | || |||| || |||||||| Sbjct 178588 ACTGTGATCGTCTTTAGAAAAGTGAGGCAACGTACGGAACTTGAAGCCATAAGGGATACG 178647 Query 302793 CTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACT 302852 || || ||||| || || || || | || | | ||| || |||||||| ||| | Sbjct 178648 TTTACCTTCAACATTTTGTTGACCAACACAAGCAGACATTTGTGAAATATT--AATGAAA 178705 Query 302853 G--CCCTTGGAGCCAGCATTTACCAT 302876 | || || || |||||| ||||||| Sbjct 178706 GAACCTTTTGAACCAGCAATTACCAT 178731 Score = 120 bits (132), Expect = 9e-22 Identities = 119/148 (80%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 301815 AATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAG-ACTTGGACGCAACACCAGCA 301872 |||||| ||||| ||| || |||||| |||| ||||| ||||| || ||||||||| Sbjct 177591 AATTTCCTTCAA-ACGAGGCACACCAAGGGTGACGTTTTTACTTG-AC---ACACCAGCA 177645 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||||||||||| ||| | |||||||| || ||||||||| ||| || ||||| Sbjct 177646 TAATGGAAAGTATTCAAAGTCATTTGAGTAGCAGGTTCACCAATAGATTGAGCAGCAATG 177705 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAA 301960 ||||||||||||| |||||||| |||| Sbjct 177706 GTACCAACCATTTCACCTGGTGCAACAA 177733 >seq2423 Length=40535 Score = 127 bits (140), Expect = 6e-24 Identities = 250/364 (69%), Gaps = 12/364 (3%) Strand=Plus/Plus Query 380906 AAGAACTACTATGGTTTATTAAGGGTGATACATCAAACAGAAGGCTA-AAGGCACAGAAT 380964 ||||||| || |||||||| ||||||||||| | | || || || || | | ||| Sbjct 22823 AAGAACTTCTTTGGTTTATCAAGGGTGATAC-TAACTCAAAACACTTGAATGAGCGTAAT 22881 Query 380965 GTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAAT 381024 || || |||||| |||| ||||| ||||||||| | ||| | || || || || Sbjct 22882 GTCAAGATCTGGGATGGCAATGGCTCTCGTGAGTTCCTTGATAAGCTGGGCCTTACTCAT 22941 Query 381025 AACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGAT 381084 | ||||| ||| |||||||| | || || || ||||||||||| ||| ||| | Sbjct 22942 CGCCGAGAAGGTGATCTTGGTCCAGTCTATGGGTTCCAGTGGAGACACTTTGGGGCCAAG 23001 Query 381085 TATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCATA 381144 || | | |||| |||| ||| |||| |||| | || | || || ||| | | | ||| Sbjct 23002 TACGTTGATTGCGATACTGACTATAGTGGTCAAGGCATTGATCAATTACAGCAAGTGATA 23061 Query 381145 G--ACCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTGGA 381202 | |||| | |||||| | ||| ||| | | ||| | ||| | |||| |||| Sbjct 23062 GATACCA--TTAAAAATAATCCAAC-AGATA-----GACGAATTATTCTCTCTGCCTGGA 23113 Query 381203 ATCCTTGCCAGATTAATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAATG 381262 ||||| | ||| | |||||||||||| ||||| ||| ||| || ||||| ||| Sbjct 23114 ATCCTGCAGATATTCCTATTATGGCTTTACCTCCTTGTCATGCTTTTTGTCAGTTTTATG 23173 Query 381263 TTTC 381266 |||| Sbjct 23174 TTTC 23177 >seq3060 Length=185695 Score = 87.8 bits (96), Expect = 5e-12 Identities = 229/342 (67%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 252347 GGAATAGACCACGGTCAATAGAACCCTTGTTAAATAGGACACTATCCTCCTGATTATAAC 252406 |||| || |||||||| ||| | | || | | ||| ||| || || ||||||| Sbjct 28932 GGAAGAGGCCACGGTCTATACTGCTTTGATTCATGATGACGGAATCTTCTTGGTTATAAC 28991 Query 252407 CAGAATGACTCATAATGGCTACAATAACTTGCTCGCCAGATGG-AATGGTATTGAGTTTG 252465 | |||| || || |||||| |||||| | | || |||| || ||| | | || | Sbjct 28992 CTGAATAACACAAAATGGCGACAATAGCGTTCTGACCAGCAGGCAATTCTCT-GAATCGC 29050 Query 252466 ATAATATCCATAAGACGAGTATCAACAAGCGGTCTCATCGGGTAAGATAGAACATAT--G 252523 | || |||||| |||||| | || || | || ||| || || |||| | Sbjct 29051 AAAAATTCCATAGAACGAGTGGTAGTGAGGGGCTTTTGAGGATAA--TACAAGATATTGG 29108 Query 252524 CTGTCTTATCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCA 252583 | | ||||||| | | | |||| |||| ||| | ||| | |||||||| |||| Sbjct 29109 CAAGCGTATCCATACGCATTTGGAAATTAGTAAGATAAACACCCATAGCCTGCTTACCCA 29168 Query 252584 TAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATG 252643 ||||| || || ||||| | ||||| || |||| || || ||||||||| ||| || Sbjct 29169 TAGCAGATTGATAGGTATTACGAGGAGATTGGTTGTGATCAGGAAAAGGAATG-ATGCTG 29227 Query 252644 CTACAACACCGAAGA-TAGTGCTTGGGTGAATTTCACAGTGA 252684 |||| | |||| | |||| || ||||||||||||||| Sbjct 29228 GCACAAATACCAAGAATCATGCTGGGATGAATTTCACAGTGA 29269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471743659103377