Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2543 93.3 3e-14 seq3880 91.5 1e-13 seq2672 89.7 4e-13 >seq2543 Length=10996 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || || |||||||||||| | ||| ||| || Sbjct 1016 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAAGTCGAGTCTTCT 1075 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | || || || |||||| ||||| ||||| | || |||||| Sbjct 1076 GATAGTATTGAAAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAA 1135 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| |||||||| || || |||| | | || || || |||||| Sbjct 1136 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTTGAGTGACTACAAC 1195 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||| || | ||| |||| Sbjct 1196 ATTCAAAAAGAATCCACTCTTCACTTGGT 1224 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || || |||||||||||| | ||| ||| || Sbjct 1700 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAAGTCGAGTCTTCT 1759 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | || || || |||||| ||||| ||||| | || |||||| Sbjct 1760 GATAGTATTGAAAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAA 1819 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| |||||||| || || |||| | | || || || |||||| Sbjct 1820 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTTGAGTGACTACAAC 1879 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||| || | ||| |||| Sbjct 1880 ATTCAAAAAGAATCCACTCTTCACTTGGT 1908 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || || |||||||||||| | ||| ||| || Sbjct 1928 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAAGTCGAGTCTTCT 1987 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | || || || |||||| ||||| ||||| | || |||||| Sbjct 1988 GATAGTATTGAAAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAA 2047 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| |||||||| || || |||| | | || || || |||||| Sbjct 2048 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTTGAGTGACTACAAC 2107 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||| || | ||| |||| Sbjct 2108 ATTCAAAAAGAATCCACTCTTCACTTGGT 2136 >seq3880 Length=130811 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||| ||||| ||| | || |||||||| || || | ||| || || | Sbjct 118626 ATGCAAATATTCGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 118685 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| ||||||||||| | || |||||| Sbjct 118686 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 118745 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||||||||| | ||| || ||||| || || |||| | ||| | ||||| || Sbjct 118746 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAGCGATTATAAT 118805 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || ||||| ||||| || | || |||| ||| | | |||| ||||| Sbjct 118806 ATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGGAAA 118855 >seq2672 Length=76086 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || || ||||| ||||| | ||| || || Sbjct 18070 ATGCAAATCTTTGTGAAGACTCTTACTGGTAAAACTATTACTTTGGAAGTTGAATCTTCT 18011 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | | ||||| || ||||| || |||||||| | || |||||| Sbjct 18010 GATAGTATTGACAACGTAAAGCAAAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAA 17951 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| || ||||| |||| |||| | | || | || || || Sbjct 17950 CAACGTCTCATCTTTGCAGGCAAACAATTGGAAGATGGCCGTACCCTTAGTGACTATAAT 17891 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || | || |||| ||||||| ||||| || Sbjct 17890 ATTCAAAAAGAATCAACCCTTCATCTGGTACTAAGACTACGAGGTGG 17844 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || ||||| || || || | ||| || | | Sbjct 17842 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 17783 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| || || ||||| | || ||||| Sbjct 17782 GATACTATTGATAATGTGAAAAGCAAAATTCAAGATAAGGAAGGTATCCCACCAGATCAG 17723 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| |||| ||| |||||||| || || |||| | || | |||||||| Sbjct 17722 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAAGTGATTACAAT 17663 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || ||||||||||| ||| | || |||| ||| | | |||| ||||| Sbjct 17662 ATACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGGAAA 17613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412821871461053