Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2543 105 6e-18 seq175 105 6e-18 seq3850 82.4 7e-11 >seq2543 Length=10996 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || |||||||| || | || | | | || || | Sbjct 1449 AAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAAAGGGTACGGCCA-TCTTCTAA 1391 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || ||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 1390 TTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGAAT 1331 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | |||| | || | | ||| || || | ||| | |||||| || Sbjct 1330 CTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTACC 1271 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 1270 AGTGAGGGTCTTGACGAAAATCTGCAT 1244 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||| || | || || | | | || ||||| || || || Sbjct 1212 GTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCA-TCTTCGAGTTGTTTACC 1154 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || || || |||||||| || ||||||||||| ||||||||||| Sbjct 1153 AGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 1094 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| | || | | ||| || || | ||| | |||||| || || || || Sbjct 1093 GACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTACCAGTGAGGGT 1034 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 1033 CTTGACGAAAATCTGCAT 1016 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||| || | || || | | | || ||||| || || || Sbjct 1668 GTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCA-TCTTCGAGTTGTTTACC 1610 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || || || |||||||| || ||||||||||| ||||||||||| Sbjct 1609 AGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 1550 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | || | | ||| || || | |||| || || ||||| || || Sbjct 1549 GACATTCTCAATGCTATCAGAAGACTCGACCTCCAAAGTGATAGTCTTTCCGGTAAGTGT 1490 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||| ||||| Sbjct 1489 TTTGACGAAAATTTGCAT 1472 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||| || | || || | | | || ||||| || || || Sbjct 1896 GTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCA-TCTTCGAGTTGTTTACC 1838 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || || || |||||||| || ||||||||||| ||||||||||| Sbjct 1837 AGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 1778 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| | || | | ||| || || | ||| | |||||| || || || || Sbjct 1777 GACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTACCAGTGAGGGT 1718 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 1717 CTTGACGAAAATCTGCAT 1700 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||| || | || || | | | || ||||| || || || Sbjct 2124 GTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCA-TCTTCGAGTTGTTTACC 2066 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || || || |||||||| || ||||||||||| ||||||||||| Sbjct 2065 AGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 2006 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| | || | | ||| || || | ||| | |||||| || || || || Sbjct 2005 GACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTACCAGTGAGGGT 1946 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 1945 CTTGACGAAAATCTGCAT 1928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||| || | || || | | | || ||||| || || || Sbjct 984 GTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCA-TCTTCGAGTTGTTTACC 926 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || || || |||||||| || ||||||||||| ||||||||||| Sbjct 925 AGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 866 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | || | | || || || | |||| || || ||||| ||||| Sbjct 865 GACATTCTCAATGCTATCAGAAGATTCGACTTCTAAAGTGATAGTCTTTCCGGTAAGAGT 806 Query 133643 TTTTACGAAAATCTGCATGGCTTAT 133667 ||||| || || |||||| |||| Sbjct 805 CTTTACAAAGATTTGCATGCTTTAT 781 >seq175 Length=1843 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || |||||||| || | || | | | || || | Sbjct 1221 AAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAAAGGGTACGGCCA-TCTTCTAA 1163 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || ||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 1162 TTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGAAT 1103 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | |||| | || | | ||| || || | ||| | |||||| || Sbjct 1102 CTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTACC 1043 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 1042 AGTGAGGGTCTTGACGAAAATCTGCAT 1016 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || |||||||| || | || | | | || || | Sbjct 1677 AAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCTGAAAGGGTACGGCCA-TCTTCTAA 1619 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || ||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 1618 TTGTTTACCAGCAAAAATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGAAT 1559 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | |||| | || | | ||| || || | ||| | |||||| || Sbjct 1558 CTTTTGCTTGACGTTTTCAATACTATCAGAAGACTCGACTTCCAAGGTAATGGTTTTACC 1499 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 1498 AGTGAGGGTCTTGACGAAAATCTGCAT 1472 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||| || | || || | | | || ||||| || || || Sbjct 1440 GTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCA-TCTTCGAGTTGTTTACC 1382 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || || || |||||||| || ||||||||||| ||||||||||| Sbjct 1381 AGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 1322 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | || | | ||| || || | |||| || || ||||| || || Sbjct 1321 GACATTCTCAATGCTATCAGAAGACTCGACCTCCAAAGTGATAGTCTTTCCGGTAAGTGT 1262 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||| ||||| Sbjct 1261 TTTGACGAAAATTTGCAT 1244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||| || | || || | | | || ||||| || || || Sbjct 984 GTGGATTCTTTTTGAATGTTGTAGTCACTCAAAGTACGGCCA-TCTTCGAGTTGTTTACC 926 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || || || |||||||| || ||||||||||| ||||||||||| Sbjct 925 AGCAAAGATCAAACGTTGTTGATCGGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 866 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | || | | || || || | |||| || || ||||| ||||| Sbjct 865 GACATTCTCAATGCTATCAGAAGATTCGACTTCTAAAGTGATAGTCTTTCCGGTAAGAGT 806 Query 133643 TTTTACGAAAATCTGCATGGCTTAT 133667 ||||| || || |||||| |||| Sbjct 805 CTTTACAAAGATTTGCATGCTTTAT 781 >seq3850 Length=152326 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | |||||| || || || || ||||| |||| || || |||| ||| || | Sbjct 95270 AAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCGCTCAAAGT--ACGACCGTCTTCTA 95327 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 || || || ||| ||||||| || || ||||| ||||| || ||||||||||| | Sbjct 95328 ATTGTTTACCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAA 95387 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTC 133600 |||||||||||| | |||| ||||| Sbjct 95388 TCTTTTGCTTGACATTGTCAATGGTGTC 95415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483397106338040