Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3903 102 2e-16 seq3687 102 2e-16 seq2833 100 7e-16 seq3792 98.7 2e-15 seq3799 87.8 4e-12 seq2609 87.8 4e-12 seq2539 87.8 4e-12 seq2179 87.8 4e-12 seq1511 87.8 4e-12 seq1497 87.8 4e-12 >seq3903 Length=141833 Score = 102 bits (112), Expect = 2e-16 Identities = 176/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 |||| || | |||||| || | |||||| || | || ||| ||| ||| |||| Sbjct 10827 AAAACGGAAAGTGGTCCCTGTTCTGTCCTGATGAAGCGCCCGGTTTATGGGATTCTTATG 10886 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA 111018 | || ||||||| | |||||| ||| || ||||| ||||| || | | ||| || Sbjct 10887 GTGAAAAGTTTGACGCTCTTTACATAAAGTACGAAAACGAAGGTAAAGCTAGAAAAACAA 10946 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 | |||||| ||||||||||| || || ||| ||||| ||||||||||| || | Sbjct 10947 TCGAGGCTCAAAAACTTTGGTTCGCCATTCTGGAAGCACAAACTGAAACTGGAATGCCCT 11006 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 |||| | || |||||| |||| ||||| || |||| ||| | || ||||||| Sbjct 11007 ATATGCTCTACAAAGATGCCTGTAATGAAAAATCAAACCAAAAGAACCTCGGCACAATTA 11066 Query 111139 AGTCTAGTAATTTGTG 111154 || ||| ||||| Sbjct 11067 CTTCATCTAACTTGTG 11082 Score = 89.7 bits (98), Expect = 1e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 113256 AAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCAGATCGTGGCAAG 113315 |||||| | ||||||||| |||| | | | ||||||||||| || || ||||| Sbjct 11947 AAGACTGTGTGGGAAATTTCGCAAAGAACCATTATTGATATGGCAGCTGACCGTGGTGCC 12006 Query 113316 TTTATCGATCAATCTCAGTCGATGAACTTATTTA-TGCCGGACACCTCACCAGATAAGGT 113374 | ||| ||||| ||||| |||||||||||||| | ||||| || | || ||| | Sbjct 12007 TATATTGATCAGTCTCAATCGATGAACTTATTCACTGCCGAACCTAGTTTCGGA-AAGTT 12065 Query 113375 GACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTATGTATTATTTG 113432 ||| ||| | || || | ||||| ||||| ||||| || || ||||| |||||| Sbjct 12066 GACTTCTATGCATTTCTATGCTTGGAAGAAAGGATTAAAGACGGGCATGTACTATTTG 12123 >seq3687 Length=248826 Score = 102 bits (112), Expect = 2e-16 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| | ||||| ||||| ||| | ||||| | ||||| ||||| || |||||| Sbjct 179682 AGACATATTAATGATGATGATGTTGTTATCTTCAACCGTCAACCTTCACTTCACAAAATG 179623 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAA 305423 || ||||||| |||| ||||| || ||| | ||| || || || |||||| || Sbjct 179622 TCAATGATGGGTCATCGTGTCAAGGT--TATGCCATATTCTACTTTCCGTTTAAATCTAT 179565 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 | | | ||||||||||| ||||||||||| |||||||||||| | || || || | Sbjct 179564 CGGTTACATCCCCTTATAATGCTGATTTTGATGGTGATGAAATGAATCTTCACGTTCCCC 179505 Query 305484 AATC 305487 |||| Sbjct 179504 AATC 179501 >seq2833 Length=34744 Score = 100 bits (110), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||| || |||||| || || || || | ||||| || || || | | ||||| Sbjct 25981 CATTTGTCGGATAATGATGTTGTCCTTTTTAACCGTCAACCTTCCCTTCACAGATTGTCT 25922 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||||||| | ||| || | || | ||||| || || || | | ||| Sbjct 25921 ATCATGGCTCACTTTGCCAAGGTTATGCCTTGGAGAACATTCCGTTTCAACGAATGTGTC 25862 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||| ||||||||||||| ||||||||||| |||||||||||||||||| | || ||| || Sbjct 25861 TGTTCGCCTTATAATGCCGATTTTGATGGTGATGAAATGAATATGCATTTGCCACAAACA 25802 >seq3792 Length=31585 Score = 98.7 bits (108), Expect = 2e-15 Identities = 217/321 (68%), Gaps = 6/321 (2%) Strand=Plus/Minus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 ||||| ||||||||| || ||||||||||||||||| || | || |||||||| Sbjct 6973 CTTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCTGGCTCATTTGCCTCTATCTTT 6914 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||||||||| ||||| |||||||| || | | || ||| |||| || | | Sbjct 6913 TGGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAATGAATTGATTTGTCGT 6854 Query 131981 GATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTT 132040 || |||| | ||||| || |||||| | | | || | || | | ||| | Sbjct 6853 GACGAAGGTCTTCATACGGATTTTGCTTGTCTTTTGTTTACTCACATTCGTAAACAACCT 6794 Query 132041 GATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATT 132100 || | | | || | |||||| ||||| || | ||| || |||| || | Sbjct 6793 AGCCAACAACGTGTGAAGGATATTATAATGGAAGCTGTAGGTATTGAACAGGAATTCTTA 6734 Query 132101 ACAGAAGCTTTGCC--TTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAGTAC 132157 || || || || || ||||| |||||||| |||||| || ||| | ||| | ||| Sbjct 6733 ACTGATGCATTACCTGTTGCA--TTGATTGGTATGAATTCT-ACTTTGATGTGTCAATAC 6677 Query 132158 ATTGAATTCGTTGCTGATCGT 132178 |||||||| |||||||||||| Sbjct 6676 ATTGAATTTGTTGCTGATCGT 6656 >seq3799 Length=82858 Score = 87.8 bits (96), Expect = 4e-12 Identities = 197/291 (68%), Gaps = 9/291 (3%) Strand=Plus/Plus Query 113160 ATCGGTAAATGGAACAATGAAGTGAAAAACTCCATTATTGCTAATCAAGGTTCGGTTCAA 113219 || |||| |||||| ||||||| || ||| || || || || || || || ||| Sbjct 44452 ATGGGTATTTGGAACGATGAAGTCAAGAACATGATCATGGCCGATGGTGGGTCTGTCCAA 44511 Query 113220 CATCTA---AAATTGCCTGATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAG 113276 || || | | | ||| | | | ||||| | | |||||| | |||||||| Sbjct 44512 AATGTACCCACAATCCCTCAACACCTCAAAGAACTCTACAAGACTGTCTGGGAAATCTCT 44571 Query 113277 CAACGTGTCGTAATTGATATGGCTGCAGATCGTGGCAAGTTTATCGATCAATCTCAGTCG 113336 || ||| | |||||||||| || || |||||| | || |||||| ||| Sbjct 44572 CAGCGTACAATTGTTGATATGGCCGCTGACCGTGGCGCCTACATTGATCAAAGTCAAAGT 44631 Query 113337 ATGAACTTATTTATGCCGGACACCTCACCA-GATAAGGTGACA--TCTGCTCTATTTTAC 113393 ||||| | ||||| | || ||| || | |||| ||||| | ||| || |||| Sbjct 44632 TTGAACATCTTTATTGCTGA-ACCCAACTTTGGTAAGCTGACAAGTATGCACT--TTTAT 44688 Query 113394 GGCTGGAAAAAAGGTTTAAAAACAGGTATGTATTATTTGCGAACACGTCCT 113444 |||||| |||| || || || || ||||||||||||||||| ||||||||| Sbjct 44689 GGCTGGCAAAAGGGATTGAAGACGGGTATGTATTATTTGCGTACACGTCCT 44739 >seq2609 Length=4940 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 148313 AAAAA--ACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATA 148370 ||||| |||| || |||| |||||||| ||||||||||||||||||||||||| || Sbjct 419 AAAAAGTACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTA 478 Query 148371 TCCAATTTCGCCAATAGGGC 148390 |||||||| |||||| |||| Sbjct 479 TCCAATTTGGCCAATCGGGC 498 >seq2539 Length=8196 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 148318 ACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATATCCAATT 148377 |||| || |||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 7473 ACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTATCCAATT 7532 Query 148378 TCGCCAATAGGGC 148390 | |||||| |||| Sbjct 7533 TGGCCAATCGGGC 7545 >seq2179 Length=1375 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 148315 AAAACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATATCCA 148374 || |||| || |||| |||||||| ||||||||||||||||||||||||| |||||| Sbjct 968 AATACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTATCCA 909 Query 148375 ATTTCGCCAATAGGGC 148390 |||| |||||| |||| Sbjct 908 ATTTGGCCAATCGGGC 893 >seq1511 Length=19889 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 148318 ACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATATCCAATT 148377 |||| || |||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 17507 ACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTATCCAATT 17448 Query 148378 TCGCCAATAGGGC 148390 | |||||| |||| Sbjct 17447 TGGCCAATCGGGC 17435 >seq1497 Length=32415 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 148318 ACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATATCCAATT 148377 |||| || |||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 30033 ACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTATCCAATT 29974 Query 148378 TCGCCAATAGGGC 148390 | |||||| |||| Sbjct 29973 TGGCCAATCGGGC 29961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186753177121081