Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3880 113 3e-20 seq2672 113 3e-20 seq2543 91.5 1e-13 seq175 91.5 1e-13 seq2895 82.4 5e-11 >seq3880 Length=130811 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| |||||||| |||||||| || || || |||||||| || |||||| Sbjct 118852 CCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCGCTT 118793 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || | || || | |||||| || ||||| || | | || |||||| | || Sbjct 118792 AATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 118733 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| |||||| |||| |||| || | ||| ||| ||||| || Sbjct 118732 ATACCTTCTTTGTCTTGAATTTTACTTTTC-ACATTATCAATGGTATCGGAAGATTCAAC 118674 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| ||||| | || || || || || |||||| Sbjct 118673 TTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACGAATATTTGCATA 118625 >seq2672 Length=76086 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| |||||||| |||||||| || || ||||||||||| |||||||| Sbjct 17616 CCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCACTT 17675 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || || | |||||| || |||||||| | | ||||||||| | || Sbjct 17676 AAAGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGCTGATCTGGTGGG 17735 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || |||||| |||| |||| || | || ||| ||||| || Sbjct 17736 ATACCTTCCTTATCTTGAATTTTGCTTTTC-ACATTATCAATAGTATCGGAGGATTCAAC 17794 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || ||||| | || || |||||||| |||||| Sbjct 17795 TTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTAACAAAGATTTGCATA 17843 >seq2543 Length=10996 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| |||||||| |||||||| || Sbjct 1015 ACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACT 956 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | |||||| || ||||| |||||||| || ||||| | || Sbjct 955 CAAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGG 896 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGG-TGTCGCTTGATTCCA 33700 | |||||| ||||| ||| || || || | ||| ||| | | || ||||| | Sbjct 895 AATACCTTCCTTGTCTTGAATCTTTTGCTTGA-CATTCTCAATGCTATCAGAAGATTCGA 837 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || ||||||||||| ||||| Sbjct 836 CTTCTAAAGTGATAGTCTTTCCGGTAAGAGTCTTTACAAAGATTTGCAT 788 >seq175 Length=1843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| |||||||| |||||||| || Sbjct 1015 ACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCACT 956 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | |||||| || ||||| |||||||| || ||||| | || Sbjct 955 CAAAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGTTGATCGGGAGG 896 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGG-TGTCGCTTGATTCCA 33700 | |||||| ||||| ||| || || || | ||| ||| | | || ||||| | Sbjct 895 AATACCTTCCTTGTCTTGAATCTTTTGCTTGA-CATTCTCAATGCTATCAGAAGATTCGA 837 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || ||||||||||| ||||| Sbjct 836 CTTCTAAAGTGATAGTCTTTCCGGTAAGAGTCTTTACAAAGATTTGCAT 788 >seq2895 Length=151278 Score = 82.4 bits (90), Expect = 5e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| || ||||| |||||||| || Sbjct 145894 ACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCACT 145953 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||||||||| ||||| ||||| | ||| || ||||| | || Sbjct 145954 CAAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGG 146013 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 | |||||| ||||| ||| || || || |||| ||| | |||||| Sbjct 146014 AATACCTTCCTTGTCTTGAATCTTTTGCTT-GACATTGTCAATGGTGTC 146061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328688292160320