Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3792 214 1e-50 seq2503 165 6e-36 seq2423 147 2e-30 >seq3792 Length=31585 Score = 214 bits (236), Expect = 1e-50 Identities = 405/586 (69%), Gaps = 25/586 (4%) Strand=Plus/Minus Query 44069 ATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAA 44128 ||||| | ||| || |||||||| | |||||||| | | |||||||| |||| || Sbjct 7036 ATTAAGCGTAAGGCTGACTGGGCTTTCAAATGGATTTCTGCTAATGATTCATTTGCTGAG 6977 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 || ||||| || ||||| | || ||||| || |||||||| || || ||||| | || Sbjct 6976 CGTCTTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCTGGCTCATTTGCCTCTATC 6917 Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGT 44248 |||||| | |||||||| ||||||||||| || ||||| ||| ||||| || || || Sbjct 6916 TTTTGGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAATGAATTGATTTGT 6857 Query 44249 CGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGAT 44308 ||||| ||||| | ||| ||||||||||| | || ||| || || | || | Sbjct 6856 CGTGACGAAGGTCTTCATACGGATTTTGCTTG--TCTT--TTGTTTA-CTCACATTCG-T 6803 Query 44309 AAGCCTTCATGTAAGACAA----TTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACA 44364 || | | | | |||| | | |||||| | | || || ||| || ||||| Sbjct 6802 AAACAACCTAGCCA-ACAACGTGTGAAGGATATTATAATGGAAGCTGTAGGTATTGAACA 6744 Query 44365 AGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAA 44424 ||||| | || ||||||||||| || || || |||||| ||||||| Sbjct 6743 GGAATTCTTAACTGATGCATTACCTGTTGCATTGATTGGTATGAATTCTACTTTGATGTG 6684 Query 44425 CCAATATATTGAATACATTGCAGATCGT-TTACTTTTGGAACTGGGTTGCGATAAACACT 44483 ||||| ||||||| |||| |||||| ||| ||| |||||| ||||||| | Sbjct 6683 TCAATACATTGAATTTGTTGCTGATCGTCTTATGGTTGCTCTTGGGTT-CGATAAAATTT 6625 Query 44484 ATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACT 44543 |||| | | || |||||||| |||||||| | ||||| || |||| || || |||| Sbjct 6624 ATATGGCAACGAATCCGTTTGACTTTATGGACATGATTTCACTGCAAGGGAAGACCAACT 6565 Query 44544 TTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAG-------- 44595 |||||||||| || ||| || |||||||| || |||||| |||||| Sbjct 6564 TTTTTGAAAAGCGTGTTTCTGATTATCAGCGTGCTGGTGTCATG--AACAAGACCCCTGT 6507 Query 44596 TGACAATAAATTTACTACGGATGAAGATTTCTAATTAATCAGAAAA 44641 ||| || ||||| ||| ||||| ||||| ||| || |||||| Sbjct 6506 TGAGAAAAAATTCACTTTGGATGCTGATTTTTAA--AAAAAGAAAA 6463 Score = 116 bits (128), Expect = 3e-21 Identities = 210/299 (70%), Gaps = 11/299 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||| | || || || ||| | || || ||||||||||| |||||| | ||||| Sbjct 7436 ATTTGGCAATTCTATAAGAAGGCAGAAGCATCTTTTTGGACAGCTGAAGAAATAGATTTA 7377 Query 43790 ACTAAAGACTTAGCACATTGG-ATTGCATTAAAACC-ACAA-GAAAAACATTTTATATCT 43846 | || |||| | ||||| | || | || | || || | |||||| ||| Sbjct 7376 AGTAGAGACCAAAATGATTGGGAAAACAAAATGACTGAGAATGAGCGATTTTTTATTTCT 7317 Query 43847 TTGGTTTTGGCGTTTTTTGCTGCGAGC---GACGGGATAGTCAATGAAAATTTGGTT-AG 43902 |||||||| || ||||| |||| || || || || |||||||||||||| | Sbjct 7316 CGTGTTTTGGCTTTCTTTGC---GAGCTCTGATGGTATTGTAAATGAAAATTTGGTGCAA 7260 Query 43903 TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||| | | ||||| || | || ||||| |||||||||||| |||||||| Sbjct 7259 AATTTTTGTG-ATGAAGTCAAAATTCCTGAAGCTAAATGTTTTTATGGCTTTCAAATCAT 7201 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021 || |||||||| || || |||| ||||||||| |||| ||||| || || ||||||| Sbjct 7200 GATTGAAAATATCCACTCTGAAACATACAGTCTTTTGATTGATACCTATATAAAAGATG 7142 >seq2503 Length=34491 Score = 165 bits (182), Expect = 6e-36 Identities = 361/534 (68%), Gaps = 19/534 (4%) Strand=Plus/Minus Query 44069 ATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAA 44128 ||||| | ||| || || ||||| | |||||||| || || || || |||| ||| Sbjct 7332 ATTAAGCGTAAGGCCGATTGGGCTTTCAAATGGATCTCATCCAACGAATCCTTTGCTGAA 7273 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 || || ||||| ||||| | ||| |||||||| |||||||| || || || || |||| Sbjct 7272 CGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCCGGTTCATTCGCCTCCATC 7213 Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGT 44248 ||||||||||||||||| ||||||||||| || |||||||| ||||| || || || Sbjct 7212 TTTTGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACGTTCAGTAATGAATTGATCTGT 7153 Query 44249 CGTGATGAAGGCTTACATTGCGATTTTGCTTG---CTTGTTACTTGGATATCTAGGAGAC 44305 ||||| ||||| | || ||||||||| || |||||| | | ||| | | || Sbjct 7152 CGTGACGAAGGTCTTCACACCGATTTTGCCTGTCTCTTGTT-CACCCACATC-CGCAAAC 7095 Query 44306 GATAAGCCTTCATGTAAGACAA----TTACAGATATTGTTGTAGAGGCAGTAAAGATAGA 44361 || || || | |||| | | || ||| ||||||| ||||| || || Sbjct 7094 ---AACCC----AGTCA-ACAACGCGTCAAGGACATTATTGTAGAAGCAGTCGGTATCGA 7043 Query 44362 ACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGAT 44421 ||||||||| || | || | ||||| || || || ||||| | ||||| Sbjct 7042 ACAAGAATTCCTGTCGGATGCTCTGCCTGTGGCATTGATCGGTATGAACGCTACCTTGAT 6983 Query 44422 GAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACA 44481 | || || ||||||| | | || |||||| | | | | || || | || || Sbjct 6982 GTGTCAGTACATTGAATTCGTCGCTGATCGTCTCATGGTCGCCCTTGGCTTTGACAAGAT 6923 Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 || | || ||||| || || |||||||| | || || | ||||||| || || Sbjct 6922 TTACAATGCCTCTAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGCAAGACCAA 6863 Query 44542 CTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAG 44595 |||||||||||| || ||| || ||||| || || |||||| |||||| Sbjct 6862 CTTTTTTGAAAAGCGTGTTTCTGATTATCAACGTGCTGGTGTCATG--AACAAG 6811 >seq2423 Length=40535 Score = 147 bits (162), Expect = 2e-30 Identities = 382/582 (66%), Gaps = 29/582 (5%) Strand=Plus/Plus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922 ||||||||||||||||| || ||||| || |||| | |||| ||||| || || || | Sbjct 22948 GAAGGTGATCTTGGTCCAGTCTATGGGTTCCAGTGGAGACACTTTGGGGCCAAGTACGTT 23007 Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 | | |||| |||| | |||| || |||||||||||| || |||||||| Sbjct 23008 GATTGCGATACTGACTATAGTGGTCAAGGCATTGATCAATTACAGCAAGTGATAGATACC 23067 Query 40983 ATTAAATCCGATC---CCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039 |||||| ||| | |||| |||| || || | | || ||||| || | || Sbjct 23068 ATTAAAAATAATCCAACAGATA---GACGAATTATTCTCTCTGCCTGGAATCCTGCAGAT 23124 Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA----- 41094 | | | | ||||| || || ||||||||| || ||||||||||| |||| || Sbjct 23125 ATTCCTATTATGGCTTTACCTCCTTGTCATGCTTTTTGTCAGTTTTATGTTTCCAACCCA 23184 Query 41095 -------ATGGTG---------AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||| |||| || ||| | ||||| |||| | || ||| Sbjct 23185 CCTTCAGATGGTGGACGTGCTAAACTATCTTGTGTGCTTTATCAGCGATCTTGCGATATG 23244 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || |||| || || ||||| || || ||||| || | || |||||||||||| Sbjct 23245 GGGTTAGGTGTACCTTTTAATATTGCTTCCTATGCGCTCTTGACTCGCATGATTGCACAC 23304 Query 41199 GTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATT 41258 || || ||||| | ||||| |||||| | || || | || ||| |||| ||||||| Sbjct 23305 GTAACAAATTTGGATCCTGGAGAATTTATACATACTATGGGTGATACACATGTTTACATC 23364 Query 41259 AATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTA 41318 ||||| | || | || | | | ||| | ||||| | ||||| | || ||||| ||| Sbjct 23365 GATCACTTGGATGCATTGAAACAGCAAGTAACACGCGAGCCTAGGTCTTTCCCAACACTA 23424 Query 41319 CTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTG- 41377 || || || |||| || |||||||| | || |||||||| ||| | Sbjct 23425 AGGATCAATCGTAAAATTGACTCTATAGATGATTTCAAGTTTGAAGATTTTGT-GTTGGA 23483 Query 41378 CGATTACAATCCGTACCCTAAAATCCACATGGACATGTCTGT 41419 |||| ||||| | ||||| ||||| | |||||||| Sbjct 23484 AAATTATAATCCTCTCAGCAAAATTGACATGAAAATGTCTGT 23525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397437006695605