Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3799 232 8e-56 seq3903 87.8 2e-12 seq1498 86.0 8e-12 >seq3799 Length=82858 Score = 232 bits (256), Expect = 8e-56 Identities = 564/845 (67%), Gaps = 17/845 (2%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||| || |||||||| ||||| ||| || || | |||||| Sbjct 43801 GCGATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGGCTTGTATATTCGACAATTTCC 43742 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 ||||| | ||| || ||||| || ||||| || | |||||| ||||| | || || Sbjct 43741 GTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGTTGGTTGCTCTTTCTATTACAA 43682 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||||||||||| | || | || || || || |||| || | ||||| | | Sbjct 43681 GCATCCTTGTAGAGCATAAACGGGTTACCGGTTTCAGTTTGTGCTTCCAAGATAGCATAC 43622 Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCG-TCCCTCCGCCT-CGTACTTTGTG 111472 || ||| | | | || || | || | | | | | ||| ||| | | || || Sbjct 43621 CATAACTTTTGTGCCT--TA-ATTGTCTCTCTCGCTCTTCCTTCGCGTTCATAGCTTTCA 43565 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 || || ||| ||||||| |||||| | || | ||| ||||| | | ||||| Sbjct 43564 TAAAGAGCTACAAACTCATCACCCCAAACATCTTGCAAACCAGGTGCTTCATTAGGACAA 43505 Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 || |||||||| | ||||| |||| || || | |||||| || || || | ||| ||| Sbjct 43504 AAGAGAGACCAATCCCCACCGTCCTTGACACGTTGCATGAAGAGATCGGGTACCCAAAGG 43445 Query 111593 GATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | |||| | ||| | | | || || || | ||| ||| || ||| || | Sbjct 43444 GCATAAAACAAATCACGGGCTCTGATT-TCATCCTTACCAAAGTTCTTTCTTAAATCTAA 43386 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 111711 || | ||||||||| ||||||||||||||||| | |||| | |||| |||| Sbjct 43385 AAAGGTAAAGATATCCGCATGCCATGGCTCAAGATACATGGCGAAGGCTCCC---GGACG 43329 Query 111712 C------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | ||| |||||| ||||| || |||||| || || || || ||||| |||| Sbjct 43328 CTTGTTGCCACCTTGATCGACATAACGTGCTGTGTTATTGAACACACGCAGCATGGGAAG 43269 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 | ||||| || | ||||||||| || |||| ||| |||||| | | || || Sbjct 43268 CAAACCATTCGAATAACCATTTGTACCGGCAATATAGGATCCATTGGCACGAATATTGTG 43209 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 |||| | || ||||| || || || || ||||| ||||| | | ||| | Sbjct 43208 AATGTTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTTAATGTTTC 43149 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 |||||| || | ||||| || ||||| ||| || | ||||||| ||||||||| || Sbjct 43148 ATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGACATCTGAGG 43089 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 112005 | |||||||| |||||||| | || || | || ||| | || | | ||||| Sbjct 43088 ACGAGGTGTACCGGCATTGAACAAAGTGGGACTGGCATGAGTAAAGAATTTCTCAGACAT 43029 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 | || ||| ||||| | ||| ||||| ||||| |||||||| || || ||||| || Sbjct 43028 CAAGTTGTAAGTCTCAATTGCAGCGTCAATATCTTCACCGTGGATACCAATAGCGACACG 42969 Query 112066 CATGA 112070 ||||| Sbjct 42968 CATGA 42964 Score = 111 bits (122), Expect = 2e-19 Identities = 263/391 (67%), Gaps = 5/391 (1%) Strand=Plus/Minus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 ||||| || ||||| || ||||| |||||| ||||| | ||| ||||| || ||||| Sbjct 44372 GTGTAAGGCTCAAAACACTCATTGAAACCCAACATTTGAGAGGTAGAGGCGGTAGGCATA 44313 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 || || | |||||| || |||| || | || || |||||| || | || Sbjct 44312 GGGGCTAACAAAAGTGAATTGCGAACGCCGTGCTTGGCTATCTTTTCCTTTAGTGAAGCC 44253 Query 110840 CAGTCGTAGTT-GAGCTTGGTTTCACCTTCCCACATGTCAAACTG-AAGCACCCCTTGGG 110897 ||||| | ||| | ||| |||| |||| ||||||| | || ||| ||||||| Sbjct 44252 CAGTCCCAAAGAGAGGTGGGTGTCACATTCC-ACATGTCGTATTGTAAGATGCCCTTGG- 44195 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG 110957 | | ||| ||| ||| | |||||||| | || | ||| |||||||| || | Sbjct 44194 ATACAGGACTACCTTCATAAGTTTCATAAGGTCCGTACTTTTCGGCCAATTCGCATGAGG 44135 Query 110958 CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 111017 | |||| | || ||||| || ||||||||||| || ||| | | ||||||||| Sbjct 44134 CTTCCAATGCAGCATGATAGATAGTTTCAAAGATTTGAATATTTAATTGTTTGGCTTCAG 44075 Query 111018 CTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAAC 111077 || ||||| | ||| || | || ||| || || | |||||| ||||| |||| Sbjct 44074 GAGAGTCAAAGGGGTAACGTAAGGCCATGAATGTGTCTGCTAAACCTTGGACACCTAAAC 44015 Query 111078 CAATAGGTCTGTGTCGCATATTAGA-CTTTC 111107 | ||||| | |||| | | || || ||||| Sbjct 44014 CGATAGGACGATGTCTCTTGTTTGATCTTTC 43984 >seq3903 Length=141833 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 111925 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984 ||| ||||| || | ||| ||||| |||||||||||||| || | ||| ||||| || || Sbjct 10392 GAAACAACTAGAGAGCTGAGGTCTGGGTGTACCAGCATTAAACAAGGTAGGTGTAGCATG 10333 Query 111985 AATGAACATACCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCC 112042 | | || || |||| |||||| || || |||| ||| || || | ||| | Sbjct 10332 AGT-AAAGTA-TTTGGAAGACATCAAATCATAGGTCTTGAAGGCACCTTCCAAGTCACCA 10275 Query 112043 CCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || |||||||| ||||| ||||||| ||| ||||| || Sbjct 10274 CCATGAATGCCGATAGCGACGCGCATGATCATATACTGAGG 10234 >seq1498 Length=30484 Score = 86.0 bits (94), Expect = 8e-12 Identities = 196/290 (68%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 182517 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 182576 ||||||||||||||||||||||||| ||| ||| ||||| ||||| | || ||||| Sbjct 13196 AGACCCTTGATGTGAGAACCATCATGATCCTGATCAGTCATGATCATCAAGCGGCCATAT 13255 Query 182577 CGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGTTGAAGACCAAGGATCTTCTTGAG 182635 | ||| || |||| |||| ||| | ||| || || || |||||||| || ||||| Sbjct 13256 CTAAGCTCGTCAACA-CTTGTGTATTTTTTACCATGCTGGAGACCAAGAATGGCCTTGAT 13314 Query 182636 ATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACA 182695 | || | || | || ||| | || ||||| || || ||||| Sbjct 13315 ACTCTTAATTTCTTCATTCTTCATAATTTCAGCATTAGAAGCATCACGGACATTGAGCAG 13374 Query 182696 TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACC-CGCAA 182754 |||||| |||| || || ||||| | | |||||| ||| ||||| | ||| | ||| Sbjct 13375 TTTACCACGAATGGGAAAGACACCCCAATAATCACGTTTAACAACAGACAAACCACTCAA 13434 Query 182755 CCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTT 182804 | || | ||| || ||||| || || || | ||| | ||||| ||| Sbjct 13435 -AACAAGCGCTTTGGCTGAATCTCCTTCAGTAATAATCAAGGTACATTTT 13483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628001218581600