Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3799 224 1e-53 seq3903 91.5 2e-13 seq2503 87.8 2e-12 >seq3799 Length=82858 Score = 224 bits (248), Expect = 1e-53 Identities = 592/901 (66%), Gaps = 12/901 (1%) Strand=Plus/Plus Query 104235 TCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACG 104294 ||||||| || || || ||||| || || ||||| ||||| ||| | ||||| ||| Sbjct 42964 TCATGCGTGTCGCTATTGGTATCCACGGTGAAGATATTGACGCTGCAATTGAGACTTACA 43023 Query 104295 ACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACAC 104354 || |||||| | | || | ||| || | || || | |||||||| ||||||| Sbjct 43024 ACTTGATGTCTGAGAAATTCTTTACTCATGCCAGTCCCACTTTGTTCAATGCCGGTACAC 43083 Query 104355 CAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTA 104414 | | || || |||||| ||||||| | || ||| ||||| || ||||| | || | Sbjct 43084 CTCGTCCTCAGATGTCCTCTTGCTTCTTGCTCACCATGAAGGAAGATTCAATTGAAGGCA 43143 Query 104415 TCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGC 104474 |||||| ||| | | ||||| ||||| || || || || ||||| || | Sbjct 43144 TCTATGAAACATTAAAAATCTGTGCCCAAATTTCGAAAACTGCAGGTGGTATCGGTCTCA 43203 Query 104475 ACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATG 104534 |||| || || | | |||||| ||| |||| || ||||||||| | || ||| Sbjct 43204 ACATTCACAATATTCGTGCCAATGGATCCTATATTGCCGGTACAAATGGTTATTCGAATG 43263 Query 104535 GTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG-- 104592 || | |||| ||||| || || || || |||||| || ||||| |||||| ||| Sbjct 43264 GTTTGCTTCCCATGCTGCGTGTGTTCAATAACACAGCACGTTATGTCGATCAAGGTGGCA 43323 Query 104593 ----GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGG 104648 ||||| |||| | |||| | ||||||||||||||||| ||||||||| | Sbjct 43324 ACAAGCGTCC---GGGAGCCTTCGCCATGTATCTTGAGCCATGGCATGCGGATATCTTTA 43380 Query 104649 AGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCT 104708 || | || || | ||| ||| | || || | ||| ||| | || | Sbjct 43381 CCTTTTTAGATTTAAGAAAGAACTTTGGTAAGGATGAAATCAGAGCCCGTGATTTGTTTT 43440 Query 104709 CCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTC 104768 || || ||| | || |||||||||||| | | || |||| |||| ||||||||| Sbjct 43441 ATGCCCTTTGGGTACCCGATCTCTTCATGCAACGTGTCAAGGACGGTGGGGATTGGTCTC 43500 Query 104769 TCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCC 104828 |||||||||| | | ||||||||| | |||| |||||| ||||||| ||| | Sbjct 43501 TCTTTTGTCCTAATGAAGCACCTGGTTTGCAAGATGTTTGGGGTGATGAGTTTGTAGCTC 43560 Query 104829 TTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGT 104888 |||| || || || ||||| | |||| | ||| | || | | | Sbjct 43561 TTTATGAAAGCTATGAACGCGAAGGAAGAGCGAGAGAGACAATTAAGGCACAAAAGTTAT 43620 Query 104889 GGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACG 104948 || | ||||| | | | ||||| || || |||| || | ||||| ||||| || | Sbjct 43621 GGTATGCTATCTTGGAAGCACAAACTGAAACCGGTAACCCGTTTATGCTCTACAAGGATG 43680 Query 104949 CCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTA 105008 | ||||| |||||| || ||| | || |||||| || || || || || |||| Sbjct 43681 CTTGTAATAGAAAGAGCAACCAACAAAACTTGGGTACCATTAAATGTAGTAACCTTTGTA 43740 Query 105009 CAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCG 105068 | ||||| | |||| |||| | ||||| ||||| |||||| | || || |||| Sbjct 43741 CGGAAATTGTCGAATATACAAGCCCCGATGAAGTTGCTGTTTGTAACTTGGCTTCTATCG 43800 Query 105069 CTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAG 105128 || | |||| | ||| ||| | ||| || | | |||| | | ||||||||||| Sbjct 43801 CTTTACCCACTTTTGT-AATCAACAGAGAA--TCTTACGATTTCAAGAGACTCCACGAAG 43857 Query 105129 T 105129 | Sbjct 43858 T 43858 >seq3903 Length=141833 Score = 91.5 bits (100), Expect = 2e-13 Identities = 177/254 (70%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 104130 ACACGAAGAGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATC 104189 ||| ||| ||||| || ||||| || ||||| | |||||| | || || |||| Sbjct 10143 ACATGAA-AGAGATTATGACTTCAATTTCTTTGGATTTAAAACCTTAGAACGCAGTTATC 10201 Query 104190 TTCAACGGCTCGATGGT-GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCC 104248 || | | || ||||| | ||| || | || ||||| ||| |||||||||| || Sbjct 10202 TTTTAAAGATCAATGGTCGAATTGTTG-AGCGTCCTCAGTATATGATCATGCGCGTCGCT 10260 Query 104249 ATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTC--CC 104306 ||||| |||||||| | ||| | || || ||| |||| || || |||||| || Sbjct 10261 ATCGGCATTCATGGTGGTGACTTGGAAGGTGCCTTCAAGACCTATGATTTGATGTCTTCC 10320 Query 104307 AAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAA 104366 || || || | ||| || ||||| ||| | || |||||||||||||| ||||| || Sbjct 10321 AAA-TACTTT-ACTCATGCTACACCTACCTTGTTTAATGCTGGTACACCCAGACCTCAGC 10378 Query 104367 TGTCCAGTTGCTTC 104380 | || ||||| ||| Sbjct 10379 TCTCTAGTTGTTTC 10392 >seq2503 Length=34491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGC 94792 |||||| |||||| | || || ||||||||| | || ||| | | || ||| | Sbjct 7342 AGTTCCCTGTATTAAGCGTAAGGCCGATTGGGCTTTCAAATGGATCTCATCCAACGAA-- 7285 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||||||||| || || |||| ||||| ||| || || |||||||| || |||| Sbjct 7284 --TCCTTTGCTGAACGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCCGGTT 7227 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 | ||| | | || | |||| | ||||| || ||| | ||||| ||| | ||| | Sbjct 7226 CATTCGCCTCCATCTTTTGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACGTTCAGTA 7167 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | || | |||| ||||||||| || || ||| || ||||| Sbjct 7166 ATGAATTGATCTGTCGTGACGAAGGTCTTCACACCGATTTTGC 7124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583232212930040