Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3903 86.0 7e-12 >seq3903 Length=141833 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 20618 CTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCG 20677 |||||||| | |||| ||| || |||||||| | || | | ||| || || ||||| Sbjct 11932 CTCAAGGAATTGTACAAGACTGTGTGGGAAATTTCGCAAAGAACCATTATTGATATGGCA 11991 Query 20678 GCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCA-TGGAGAATCC 20736 || || || || ||||| || || ||||| || ||| | || | |||| || ||| || Sbjct 11992 GCTGACCGTGGTGCCTATATTGATCAGTCTCAATCGATGAACTTATTCACTGCCGAA-CC 12050 Query 20737 GAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGG 20796 || | | ||| ||| || |||||| | || | ||| | || || | |||||||| Sbjct 12051 TAGTTTCGGAAAGTTGACTTCTATGCATTTCTATGCTTGGAAGAAAGGATTAAAGACGGG 12110 Query 20797 CATGTACTATCTGCGG 20812 |||||||||| || || Sbjct 12111 CATGTACTATTTGAGG 12126 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 78195 CAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAG 78254 ||||||||||||||||||||| | || |||||||| | || | |||||| | || Sbjct 12123 CAAATAGTACATGCCCGTCTTTAATCCTTTCTTCCAAGCATAGAAATGCATAGAAGTCAA 12064 Query 78255 CTTGGCCAGACTCGGGTTCTCCA-TGAAGATGTTGAGCGACTGGGACTGGTCGATGTACG 78313 ||| | | ||| ||||| || |||| | ||| | ||| || ||||| || || || | Sbjct 12063 CTTTCCGAAACT-AGGTTCGGCAGTGAATAAGTTCATCGATTGAGACTGATCAATATAGG 12005 Query 78314 CACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 |||| ||||| || ||||| || || | | |||||| ||| ||||| Sbjct 12004 CACCACGGTCAGCTGCCATATCAATAATGGTTCTTTGCGAAATTTCCCA 11956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548497915428240