Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3799 134 2e-26 seq2503 107 2e-18 seq3792 104 3e-17 >seq3799 Length=82858 Score = 134 bits (148), Expect = 2e-26 Identities = 289/427 (68%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGT 53238 ||||| ||||| ||||||| ||||| | |||||||||||||| || | |||| || Sbjct 42951 CCTCAACATCTTATCATGCGTGTCGCTATTGGTATCCACGGTGAAGATATTGACGC-TGC 43009 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 |||||| ||| |||| ||| | || | |||||| || |||| || || |||| Sbjct 43010 AATTGAGACTTACAACTTGATGTCTGAGAAATTCTTTACTCATGCCAGTCCCACTTTGTT 43069 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 ||| || ||||| || ||||||||||| |||||| || | | |||||||| || Sbjct 43070 CAATGCCGGTACACCTCGTCCTCAGATGTCCTCTTGCTTCTTGCTCACCATGAAGGAAGA 43129 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 || || || |||||||| || || | || |||||||| || || || | || Sbjct 43130 TTCAATTGAAGGCATCTATGAAACATTAAAAATCTGTGCCCAAATTTCGAAAACTGCAGG 43189 Query 53419 TGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 |||||||||| || || | | | || | ||||| || || | || || || | Sbjct 43190 TGGTATCGGTCTCAACATTCAC-AATATTCGTGCCAATGGATCCTATATTGCCGGTACAA 43248 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 | || | |||| | | || ||||| || || ||||| ||||| || || || | Sbjct 43249 ATGGTTATTCGAATGGTTTGCTTCCCATGCTGCGTGTGTTCAATAACACAGCACGTTATG 43308 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || | || ||||| ||||| ||| | |||||||| || || ||||| ||||| | Sbjct 43309 TCGATCAAGGTGGCAACAAGCGTCCGGGAGCCTTCGCCATGTATCTTGAGCCATGGCATG 43368 Query 53598 CCGACAT 53604 | || || Sbjct 43369 CGGATAT 43375 >seq2503 Length=34491 Score = 107 bits (118), Expect = 2e-18 Identities = 206/301 (68%), Gaps = 11/301 (4%) Strand=Plus/Minus Query 159001 TGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTG 159060 || || ||||||||||||||| |||| || || || |||| || ||||| || |||||| Sbjct 3275 TGCTGAAGCATGAGCCACATGCCCTCTACATAGTCACGCGCATGTCCCCAATCACGCTTG 3216 Query 159061 GCATCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCAC-------TCAGCCAG 159113 || || ||||| || || | | ||| || | ||| ||| ||||| | Sbjct 3215 GCGTCAATGTTACCCAGATAAA-GACATT-CTTGACGAC--CCAAGTGAATATCAGCTAC 3160 Query 159114 ACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAA 159173 | | | |||||||| || || ||||| || || || || ||||||||||| Sbjct 3159 AGCACGAGTGATCTTTCGAGTGACAAAGGTACGACCACGACGGGGTGATTCATGGTTAAA 3100 Query 159174 CAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTA 159233 ||| || ||| |||| || ||| || || || || ||||| || || |||||||| Sbjct 3099 CAGGATACCGTTACAGGCATACATGTCGTAAGATTCTCGGTAGTTGACCGTAATCCAGTA 3040 Query 159234 TCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 ||| ||||||||| || || || ||| ||||| || || ||||| ||| ||||| Sbjct 3039 ACCATAGAGCTTGGCCACACCATAAGGAGAACGAGGGTAGAAGGGTGTAGTCTCCTTTTG 2980 Query 159294 A 159294 | Sbjct 2979 A 2979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||||||||| |||| | || ||||| | ||||| ||||| |||||||||||| Sbjct 7157 ATCAATTCATTACTGAACGTCAAACCGGGCATCAAACCACGTTTCTTTAACCAAAAGATG 7216 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||| ||||| |||||||||||||||||| ||||||||||| || |||| Sbjct 7217 GAGGCGAATGAACCGGAAAAGAAGATGCCTTCGACAGCGGCAAAGGCGACCAGACGTTCA 7276 Query 74904 GCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTT 74956 || || | | | | ||| | ||||| | |||||| || || || || || Sbjct 7277 GCAAAGGATTCGTTGGATGAGATCCATTTGAAAGCCCAATCGGCCTTACGCTT 7329 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||||||| || ||||||||||||||||||||||| |||| | ||||| | ||||| Sbjct 6835 ATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTCCAT 6894 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAG 74578 ||||||| ||||| ||| |||||| ||| || |||| ||||||| Sbjct 6895 AAAGTCGAATGGGTTAGAGGCATTGTAAAT---CTTGTCAAAGCCAAGGGCGACCATGAG 6951 Query 74579 GCGATCCGCCACAAATTGAATGTACTG 74605 ||||| || || |||| ||||||||| Sbjct 6952 ACGATCAGCGACGAATTCAATGTACTG 6978 >seq3792 Length=31585 Score = 104 bits (114), Expect = 3e-17 Identities = 227/338 (67%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 124509 TGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCAC 124568 || || ||||| ||| | | |||||||||| || | ||||| | ||| |||||| Sbjct 15611 TGTGTTTCACCTGTGGCCAGGACGAAATCTTGAGGCTTTTCTTGCTGAAGCATGAGCCAC 15552 Query 124569 ATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC 124628 || | | || ||||| || || ||||| || || |||||||| | ||| || || Sbjct 15551 ATACCCTCTACATAGTCACGAGCATGTCCCCAATCACGTTTGGCATCAATGTTACCCAGA 15492 Query 124629 TC--GATTGGCTTGGCCGTCTTGTTCCAC-TCCGCCAAACCCAGTGTAATCTTGCGCGTC 124685 | || | || | | || | | || |||| | | |||| || || || || Sbjct 15491 TAAAGACAATCCTGACGGCCTAAGTGAATATCGGCCACAGCACGTGTGATTTTACGGGTT 15432 Query 124686 ACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAAC 124745 ||||| ||| || || || ||||||||||| || || ||| | || ||| || Sbjct 15431 ACAAAGGTACGACCACGACGAGGTGATTCGTGGTTGAAAAGGATACCATTGCAAGCATAC 15372 Query 124746 ATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCA 124805 || |||| || || ||||||||| || ||||| || ||| ||||||||| || ||| Sbjct 15371 ATGTCGTAGGATTCACGGTAGTTTACAGTGATCCAGTAGCCATAGAGCTTGGCAACACCA 15312 Query 124806 TAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG 124843 ||||| || || ||||| || ||| |||| ||||| Sbjct 15311 TAGGGAGACCGAGGATAGAAGGGCGTGGTTTCCTTTTG 15274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189179575800