Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3789 91.5 1e-13 seq2895 91.5 1e-13 seq2543 84.2 2e-11 seq175 84.2 2e-11 >seq3789 Length=135228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 |||||||||||| ||||| ||||| |||||||| || || || | || |||||| Sbjct 104402 TAAAATGCAAATCTTTGTTAAAACACTTACTGGCAAGACAATCACTTTGGAGGTCGAATC 104461 Query 27846 CACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | | | | || | ||| ||||| |||||||| ||||| |||||| |||| Sbjct 104462 CTCTGATAGTATTGAGAAT--GTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCT 104519 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || || ||||| || || || | || || | || | ||| || Sbjct 104520 GATCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACTTTGAGTGAC 104579 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| || |||| | || |||||| | ||| | ||||| || Sbjct 104580 TACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 104632 >seq2895 Length=151278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 27858 ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTT 27917 ||||| ||||| ||||| || ||||| |||||| |||| || || ||||| | Sbjct 146051 ACAAT--GTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAACGTCT 145994 Query 27918 AATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAA 27977 ||||| ||||| ||||||||||| || | |||| |||| || |||||||| ||||| Sbjct 145993 CATTTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGAGTGACTACAACATTCAAAA 145934 Query 27978 AGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||| | || |||||| | ||| | ||||| || Sbjct 145933 GGAATCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGG 145895 >seq2543 Length=10996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| ||||| || || ||| || | || ||||| | Sbjct 1472 ATGCAAATTTTCGTCAAAACACTTACCGGAAAGACTATCACTTTGGAGGTCGAGTCTTCT 1531 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | | || | ||| ||||| ||||| || ||||| |||||| |||| || | Sbjct 1532 GATAGCATTGAGAAT--GTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATC 1589 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || ||||| || |||||| | || || | || | ||| || |||| Sbjct 1590 AACAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTTGAGTGACTACA 1649 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| |||| | || |||||| | ||| | ||||| || Sbjct 1650 ACATTCAAAAAGAATCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGG 1698 >seq175 Length=1843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| ||||| || || ||| || | || ||||| | Sbjct 1244 ATGCAAATTTTCGTCAAAACACTTACCGGAAAGACTATCACTTTGGAGGTCGAGTCTTCT 1303 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | | || | ||| ||||| ||||| || ||||| |||||| |||| || | Sbjct 1304 GATAGCATTGAGAAT--GTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATC 1361 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || ||||| || |||||| | || || | || | ||| || |||| Sbjct 1362 AACAACGTTTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTTTGAGTGACTACA 1421 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| |||| | || |||||| | ||| | ||||| || Sbjct 1422 ACATTCAAAAAGAATCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGG 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355845394336767