Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3880 89.7 4e-13 seq2672 89.7 4e-13 >seq3880 Length=130811 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||||||| ||||| |||||||| || || || |||||||||||||||||| Sbjct 118852 CCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCGCTT 118793 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| || | || || || |||||||| ||||| ||||| | || || || | || Sbjct 118792 AATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 118733 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||| ||||| ||| | | | | |||||| || || || Sbjct 118732 ATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTCAACT 118673 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || || || || || || || |||||||| Sbjct 118672 TCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACGAATATTTGCAT 118626 >seq2672 Length=76086 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||||||| ||||| |||||||| ||||| |||||||||||||| ||||| Sbjct 17616 CCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCACTT 17675 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || | || ||||| ||||| || ||||| || || | ||||| || |||||| Sbjct 17676 AAAGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGCTGATCTGGTGGG 17735 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | || || || ||||| ||| | | | | |||||| || || || Sbjct 17736 -ATACCTTCCTTATCTTGAATTTTGCTTTTCACATTATCAATAGTATCGGAGGATTCAAC 17794 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || || || || || ||||||||||||||||| Sbjct 17795 TTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTAACAAAGATTTGCAT 17842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429525073223873