Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq862 152 5e-32 seq656 145 8e-30 >seq862 Length=17893 Score = 152 bits (168), Expect = 5e-32 Identities = 430/651 (66%), Gaps = 21/651 (3%) Strand=Plus/Minus Query 16675 TTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTC 16734 ||| ||||| || || ||||| || ||||| || ||||| | ||||| || | || Sbjct 17778 TTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 17719 Query 16735 CATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATT 16792 ||| || ||||| ||||| ||||| || |||| || | || | || || | | || Sbjct 17718 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAAT--CCAAGAGCAACCATG 17661 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 | | ||| || || ||||| || || || ||||| || | ||||||| || || ||| Sbjct 17660 AGACGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGAGA 17601 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 || |||||||| |||||||||||| ||| || || || |||||| || ||| Sbjct 17600 GCGACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATA 17541 Query 16913 --CTAGCAACTCGTTC----CTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACAT 16966 || | || ||||| || ||||| | || | |||||| |||| | ||||| Sbjct 17540 TCCTTG--ACGCGTTCTTGGCTAGGACGCT-TACG---AAGATGGGTAAATAAAAGACAA 17487 Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026 || || || ||| | || || || | | ||| | ||| || |||||||| ||| Sbjct 17486 GCAAAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCG 17427 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 |||||| || ||||| || | |||||| || | || || || ||||| ||||| ||| Sbjct 17426 GGCATCAGACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATA 17367 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACG-AAT 17145 || ||||| | ||||| || | | ||||| || | | || || | | | ||| Sbjct 17366 CCTTCGACAGCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCG--TTAG--AGGAAAT 17311 Query 17146 CCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 |||||| |||| || || ||| ||| || ||| || || || || || ||| Sbjct 17310 CCATTTGAAGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAA 17251 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | | ||||| || || ||| | ||||| || || || | || ||||| |||| Sbjct 17250 GAGCATTTCTTTCTCTTGGTTGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTC 17191 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 | ||| || || || || || ||||| || || || ||| ||||| Sbjct 17190 TGCGTGAATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTC 17140 >seq656 Length=25916 Score = 145 bits (160), Expect = 8e-30 Identities = 292/427 (68%), Gaps = 16/427 (4%) Strand=Plus/Plus Query 16688 ACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA 16747 || || ||||| || ||||| || ||||| | ||||| || | ||||| || ||||| Sbjct 498 ACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTCCATAAAGTCAAAT 557 Query 16748 GGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTA 16805 ||||| ||||| || |||| || | || | || || | | || | | ||| || | Sbjct 558 GGATTGGTAGCCATGTAAATCTTGTCGAAT--CCAAGAGCAACCATAAGGCGATCGGCAA 615 Query 16806 CAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAG 16865 | ||||| || ||||||||||| || | | ||||| || || ||| || ||||||| Sbjct 616 CGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGCAACGGGAAGAG 675 Query 16866 CTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA--CTAGCAACTCG 16923 | |||||||||||| || || || || |||||| || ||| || | || || Sbjct 676 CATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATCCTTG--ACGCG 733 Query 16924 TTC----CTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAAT 16979 ||| || ||||| | || | |||||| |||| | ||||| || || || || Sbjct 734 TTCTTGGCTAGGACGCT-TACG---AAGATGGGTAAATAAAAGACAAGCAAAGTCAGTAT 789 Query 16980 GTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTC 17039 | | || || || | | ||| | ||| || |||||||| || |||||| || | Sbjct 790 GAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAAACCAC 849 Query 17040 GTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATG 17099 ||||||| | |||||| || | || || || ||||| ||||| ||||| ||||| | | Sbjct 850 GTTTCTTGAGCCAAAAAATAGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGCAG 909 Query 17100 CAAACGC 17106 |||| || Sbjct 910 CAAAGGC 916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517535546676720