Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq49 89.7 4e-13 seq453 82.4 6e-11 >seq49 Length=122128 Score = 89.7 bits (98), Expect = 4e-13 Identities = 280/431 (65%), Gaps = 27/431 (6%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || ||||| || | ||||| || || |||||||| ||||| || |||| || Sbjct 120097 GGCGATCTTGGACCAGTCTACGGATTTCAATGGAGACACTTTGGTGCCAAATACGTTGAT 120156 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 ||| | | | ||| |||| ||||| || ||||| | ||| || || || || | Sbjct 120157 TGTGATACTGATTAT--ACAGGACAAGGCATTGATCAATTACAACAAGTGATTGACACTA 120214 Query 18907 TTAAAA-CAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 | |||| ||| |||| | | | |||| ||| |||| | ||||| || ||||| Sbjct 120215 TAAAAAACAATCCCACTGATCGCA-GAATCATTCTATCAGCATGGAACCCTGCAGATATT 120273 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAA------- 19018 || | |||| |||| || ||||| | || ||||| ||||| || | || Sbjct 120274 CCTATCATGGCTTTACCACCTTGTCATGCCTTTTGTCAATTTTATGTATCTAATCCACCG 120333 Query 19019 --------CGG---TG---AATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGC 19064 ||| || | ||||| || | || || | || | |||||||| Sbjct 120334 CAGGATGGCGGACGTGCCAAGTTATCTTGTGTGCTCTATCAACGTTCTTGTGATATGGGG 120393 Query 19065 CTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTT 19124 || || || || ||||| |||||| ||||||||| | || ||| | |||||||| Sbjct 120394 CTGGGTGTTCCTTTCAATATTGCTTCTTATGCACTTTTGACACGCATGATTGCGCATGTA 120453 Query 19125 ACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAAT 19184 |||| ||| | | || || || || ||||||||||| ||| ||||| |||| || || Sbjct 120454 ACAGATCTTGATCCTGGTGAATTCATACATACAATGGGCGATACACATGTTTATGTGGAT 120513 Query 19185 CATATAGATGC 19195 ||| | || || Sbjct 120514 CATCTTGACGC 120524 >seq453 Length=36563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 19056 GATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTA 19115 |||||||| || || || || ||||| ||||| ||||||||| | || ||| | Sbjct 19401 GATATGGGACTGGGTGTTCCTTTCAATATTGCCTCTTATGCACTTTTGACACGCATGATT 19460 Query 19116 GCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATT 19175 |||||||| |||| ||| | | || || || || ||||||||||| ||| ||||| || Sbjct 19461 GCGCATGTAACAGATCTTGATCCTGGTGAATTCATACATACAATGGGCGATACACATGTT 19520 Query 19176 TACTTGAATCATATAGATGC 19195 || || ||||| | || || Sbjct 19521 TATGTGGATCATCTTGACGC 19540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399496433643930