Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq71 98.7 8e-16 seq769 91.5 1e-13 seq243 86.0 5e-12 >seq71 Length=102704 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || || |||||||| ||||| ||||| | Sbjct 21252 CCGCCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTC 21311 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | ||||| ||||| ||||| || |||| || | || ||||| || Sbjct 21312 AAAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCAGGAGGA 21371 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||||||| || || | | | | ||||| || ||| Sbjct 21372 ATACCTTCCTTATCTTGGATCTTTTGCTTGACATTTTCAATACTATCAGAGGACTCAACC 21431 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||||||||| || || | || |||||||| |||||||| Sbjct 21432 TCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 21478 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || |||||||| ||||| ||||| || || | | ||||| || ||||| || Sbjct 21510 GTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCCTCAAGTTGTTTACCA 21569 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||||||||| ||||| || | ||||||||||| |||||||| || Sbjct 21570 GCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGAATCTTTTGCTTG 21629 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| | ||||| | || ||| | ||||| ||||||||||| | || Sbjct 21630 ACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCTTGCCGGTAAGAGTC 21689 Query 21159 TTGACAAATATTTGCATTTT 21178 || || || ||||||||||| Sbjct 21690 TTTACGAAGATTTGCATTTT 21709 >seq769 Length=21522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| || |||||||||||||||||||| ||||| | | || Sbjct 14280 AGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCT 14221 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || ||||| || ||| | || || | || || || || | ||||||||||| Sbjct 14220 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 14161 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||||||| || | | ||| ||| ||| | || ||| | ||||| ||| Sbjct 14160 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTC 14101 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTTATAAA 21192 || || || | || |||||||| |||||||| || || ||||||| Sbjct 14100 TTTCCAGTAAGTGTCTTGACAAAGATTTGCATGATGTAT---TTATAAA 14055 >seq243 Length=56764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||| || |||||||| ||||||||||| ||||| | | || Sbjct 37866 AGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCT 37925 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || ||||| || ||| | || || | || || || || | ||||||||||| Sbjct 37926 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 37985 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || |||||||| || | | ||| ||| ||| | ||| ||| | ||||| || Sbjct 37986 TGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCATC 38045 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || |||||||| |||||||| Sbjct 38046 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 38077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422251202674664