Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq656 104 2e-17 seq71 104 2e-17 seq862 96.9 4e-15 seq686 91.5 2e-13 >seq656 Length=25916 Score = 104 bits (114), Expect = 2e-17 Identities = 217/321 (68%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| || || ||||| || || ||||| || ||||||| || || || || | Sbjct 928 GAGCGTCTTGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCT 869 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || ||||||||||||||||| || | ||||| || |||| |||||||| || | ||| Sbjct 868 ATTTTTTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATC 809 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT-TTGGTGCA 117213 | | || || || || ||| |||||||| ||| | | || | ||| || || | Sbjct 808 TGTCGTGATGAAGGCCTTCATACTGACTTTGCTTGTCTTTTATTTACCCATCTTCGT-AA 750 Query 117214 GCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG 117273 ||| || ||| | ||||||| ||| ||| || || || ||| ||| || ||| Sbjct 749 GCGTCCTAGCCAAGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACAGGA 690 Query 117274 CTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCA 117333 || | || || || || || || ||| | || | |||| | ||||| || Sbjct 689 ATTTTTGACGGATGCTCTTCCCGTTGCTCTCATCGGCATGAATTCTGCCTTGATGTGCCA 630 Query 117334 ATACATCGAGTTCGTCGCCGA 117354 ||||||||| ||||| ||||| Sbjct 629 ATACATCGAATTCGTTGCCGA 609 >seq71 Length=102704 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| |||||||| || || || ||||| || || || | || |||||| | Sbjct 21710 AAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACGATTACTTTAGAAGTCGAATC 21651 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || || | ||| ||||| |||| |||| ||||| || || ||||| | || Sbjct 21650 TTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCTCCTGA 21591 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || |||| |||| || || ||||| || || || | || || | | ||||| Sbjct 21590 CCAACAGAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTTTGAGTGACTA 21531 Query 40866 CAACATCCAGAAGGA 40880 ||||||||| ||||| Sbjct 21530 CAACATCCAAAAGGA 21516 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || ||||| ||| | || || || || | Sbjct 21478 ATGCAAATCTTTGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAGGTTGAGTCCTCT 21419 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || || | ||| ||||| |||| || | || || || || || || | ||||| Sbjct 21418 GATAGTATTGAAAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCTCCTGACCAA 21359 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| ||||| ||||| || || | || || | | ||||||||| Sbjct 21358 CAACGTCTCATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTTTGAGTGACTACAAC 21299 Query 40870 ATCCAGAAGGA 40880 ||||| ||||| Sbjct 21298 ATCCAAAAGGA 21288 >seq862 Length=17893 Score = 96.9 bits (106), Expect = 4e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 || || || || ||||| || || ||||| || ||||||| || || || || || Sbjct 17335 GAACGTCTTGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCC 17394 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || ||||||||||| ||||| || || |||||||| |||| |||||||| || | ||| Sbjct 17395 ATCTTTTGGCTCAAAAAACGTGGTCTGATGCCCGGTTTGACATTCAGCAATGAATTGATC 17454 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT-TTGGTGCA 117213 | | || || ||||| ||| |||||||| ||| | | || | ||| || || | Sbjct 17455 TGTCGTGATGAAGGTCTTCATACTGACTTTGCTTGTCTTTTATTTACCCATCTTCGT-AA 17513 Query 117214 GCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCA 117270 ||| || ||| | ||||||| ||| ||| || || || ||| ||| || || Sbjct 17514 GCGTCCTAGCCAAGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACA 17570 >seq686 Length=24674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| |||||||| || || || ||||| || || || | || || ||| | Sbjct 10545 AAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTTGAATC 10604 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || || | ||| ||||| |||| |||| || || || || ||||| | || Sbjct 10605 TTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGA 10664 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| ||||| | ||| || ||||| || || |||| || || | | || || Sbjct 10665 CCAACAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTA 10724 Query 40866 CAACATCCAGAAGGA 40880 ||||| || || || Sbjct 10725 TAACATTCAAAAAGA 10739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515209191867040