Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq769 156 6e-33 seq686 147 3e-30 seq243 145 1e-29 seq49 131 3e-25 seq453 129 9e-25 seq439 114 2e-20 seq175 111 2e-19 >seq769 Length=21522 Score = 156 bits (172), Expect = 6e-33 Identities = 178/238 (75%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 124533 AATACA--ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTG 124590 |||||| |||||||| ||| | |||||||| || || || || || ||| |||| ||| Sbjct 14061 AATACATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTG 14120 Query 124591 AAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCAC 124650 || | ||| || || ||| ||||||| || |||||||| || |||||||| || | Sbjct 14121 AATCTTCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTC 14180 Query 124651 CTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAG 124710 ||||||||||| | || || ||||| || |||||| | || ||| |||| || || | Sbjct 14181 CTGATCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCG 14240 Query 124711 ATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| |||||||| ||||| ||| | || ||||| | ||| | || |||||||| Sbjct 14241 ACTATAACATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGGTAT 14298 >seq686 Length=24674 Score = 147 bits (162), Expect = 3e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || ||||||| || || ||||| || || ||| |||| ||||| | Sbjct 10548 AATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTTGAATCTTC 10607 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || || || ||||||||||| |||||||| || ||||| || Sbjct 10608 TGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCA 10667 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || ||||| || || |||||| | || || |||| || || |||||||| Sbjct 10668 ACAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAA 10727 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||| ||| | || |||||| | ||| | || || ||| Sbjct 10728 CATTCAAAAAGAATCTACTCTTCACTTGGTTCTTCGTCTTCGTGGCGGT 10776 >seq243 Length=56764 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| || || || | || ||| |||| | || | | Sbjct 38077 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGATGATTACTTTAGAAGTCGAGTCTTCT 38018 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||||| ||||||||||| || |||||||| || ||||||||| Sbjct 38017 GACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 37958 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| || |||||| | || ||| |||| || || || ||||| Sbjct 37957 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAAC 37898 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| | |||||||| | ||| | || |||||||| Sbjct 37897 ATCCAAAAGGAATCTACTCTTCATTTGGTCCTTCGTCTCCGTGGTGGTAT 37848 >seq49 Length=122128 Score = 131 bits (144), Expect = 3e-25 Identities = 333/502 (66%), Gaps = 26/502 (5%) Strand=Plus/Minus Query 205308 ATCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttt 205367 |||||||| | || |||||||| | || || || || ||| ||||| | |||| Sbjct 120591 ATCTACTTTACGGTTGATTTTTAAAGTAGGGAAAGGTTTGGGTTCACGTTGAACCTGTTG 120532 Query 205368 ttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTC 205427 || | | | | || ||||| ||||| | ||||| || || || |||| || ||||| Sbjct 120531 CTTGAGTGCGTCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTC 120472 Query 205428 ATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAAC 205487 | || | | || |||| ||| |||||||| ||||| | |||| ||||| Sbjct 120471 ACCAGGATCAAGATCTGTTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAAT 120412 Query 205488 ATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATG-TAAGAT 205546 ||| || || ||||| | ||||||||| || | |||||| | ||| | ||| | Sbjct 120411 ATTGAAAGGAACACCCAGCCCCATATCACAAGAACGTTGATAGAGCACACAAGATAACTT 120352 Query 205547 ---ATTT-----ATT---------ATTAATTACATGAAATTGTACAAAACA-ATGACAAG 205588 | | || |||| ||||| |||||| |||||| |||||||| Sbjct 120351 GGCACGTCCGCCATCCTGCGGTGGATTAGATACATAAAATTG-ACAAAAGGCATGACAAG 120293 Query 205589 GTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAG 205648 |||||| | |||| | || |||| ||| ||||| |||| || || || | | | Sbjct 120292 GTGGTAAAGCCATGATAGGAATATCTGCAGGGTTCCATGCTGATAGAATGATTCTGCGA- 120234 Query 205649 ATTCAG---GtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGAT 205705 |||| | || |||||||| | | || | ||| ||||||||||| ||||| Sbjct 120233 --TCAGTGGGATTGTTTTTTATAGTGTCAATCACTTGTTGTAATTGATCAATGCCTTGTC 120176 Query 205706 TTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCAT 205765 |||||||| ||||| ||||| ||||| |||||||| || | ||||||||| || | Sbjct 120175 CTGTATAATCAGTATCACAATCAACGTATTTGGCACCAAAGTGTCTCCATTGAAATCCGT 120116 Query 205766 AAACTGGACCTAAATCACCTTC 205787 | ||||| || | ||| ||||| Sbjct 120115 AGACTGGTCCAAGATCGCCTTC 120094 >seq453 Length=36563 Score = 129 bits (142), Expect = 9e-25 Identities = 329/499 (66%), Gaps = 20/499 (4%) Strand=Plus/Minus Query 205308 ATCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttt 205367 |||||||| | || |||||||| | || || || || ||| ||||| | |||| Sbjct 19607 ATCTACTTTACGGTTGATTTTTAAAGTAGGGAAAGGCTTGGGTTCACGTTGAATCTGTTG 19548 Query 205368 ttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTC 205427 || | | | | || ||||| ||||| | ||||| || || || |||| || ||||| Sbjct 19547 CTTAAGTGCGTCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTC 19488 Query 205428 ATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAAC 205487 | || | | || |||| ||| |||||||| ||||| | |||| |||| Sbjct 19487 ACCAGGATCAAGATCTGTTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAGGCAAT 19428 Query 205488 ATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACAT-------------TT 205534 ||| || || ||||| | ||||||||| || | |||||| | || Sbjct 19427 ATTGAAAGGAACACCCAGTCCCATATCACAAGAACGTTGATAAAGCACACAAGACAACTT 19368 Query 205535 GACATGTAAGATAT--TTATT---ATTAATTACATGAAATTGTACAAAACA-ATGACAAG 205588 | || || | || | | |||| ||||| |||||| |||||| |||||||| Sbjct 19367 GGCACGTCCGCCATCCTGAGGTGGATTAGATACATAAAATTG-ACAAAAGGCATGACAAG 19309 Query 205589 GTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAG 205648 | |||| | |||| | || |||| ||| ||||| |||| | || || | | | Sbjct 19308 GCGGTAAAGCCATGATAGGAATATCTGCAGGGTTCCATGCTGACAGAATGATTCTGCGAT 19249 Query 205649 ATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTG 205708 ||| || |||||||| | | || | ||| ||||||||||| ||||| || Sbjct 19248 CAGTAGGATTGTTTTTTATAGTGTCGATCACTTGTTGTAATTGATCAATGCCTTGCCCTG 19189 Query 205709 TATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAA 205768 |||||| ||||| ||||| ||||| |||||||| || | ||||||||| || || | Sbjct 19188 TATAATCAGTATCACAATCAACGTATTTGGCACCAAAGTGTCTCCATTGAAATCCGTAGA 19129 Query 205769 CTGGACCTAAATCACCTTC 205787 |||| || | ||||||||| Sbjct 19128 CTGGTCCAAGATCACCTTC 19110 >seq439 Length=37054 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || || |||||||| |||||||| || |||||||| Sbjct 23433 TGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCA 23492 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || ||||| || || |||||| | || || |||| || || ||||| || Sbjct 23493 ACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAA 23552 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||||||| ||||| || | || |||||| | ||| | || |||||||||| Sbjct 23553 CATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTATTA 23605 >seq175 Length=68572 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || || |||||||| |||||||| || |||||||| Sbjct 14383 TGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCA 14442 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || ||||| || || |||||| | || || |||| || || ||||| || Sbjct 14443 ACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAA 14502 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || |||||| | ||| | || |||||||| Sbjct 14503 CATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 14553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755441325267200