Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq243 127 2e-24 seq686 125 6e-24 seq769 122 8e-23 seq439 104 2e-17 seq175 104 2e-17 >seq243 Length=56764 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||| || ||||| ||||| || ||||| | || || ||| ||| Sbjct 37869 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCTTCG 37928 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| ||||| |||||||||| || ||||| ||||| || || ||||||||| | Sbjct 37929 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 37988 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||||||||| || | |||| ||||| | |||||| || | || | | | || Sbjct 37989 ATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCATCTTT 38048 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||| || |||||| Sbjct 38049 CCAGTAAGTGTCTTGACAAAGATTTGCATG 38078 >seq686 Length=24674 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| |||||||||||||| ||||| |||| ||| || || ||| Sbjct 10757 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCG 10698 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| |||||| | |||||||| || || || ||||| || || ||||| ||| | Sbjct 10697 AGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGA 10638 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | ||||| | || | || || || | || | || ||| Sbjct 10637 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAATTGTCTTG 10578 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| ||||| || || ||||| Sbjct 10577 CCGGTAAGAGTCTTTACGAAGATTTGCAT 10549 >seq769 Length=21522 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || ||||||||||| || ||||| | || || ||| ||| Sbjct 14277 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCG 14218 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| ||||| |||||||||| || ||||| ||||| || || ||||||||| | Sbjct 14217 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 14158 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || |||||||| || | |||| ||||| | || || || | || | || || Sbjct 14157 ATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTT 14098 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||| || |||||| Sbjct 14097 CCAGTAAGTGTCTTGACAAAGATTTGCATG 14068 >seq439 Length=37054 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || ||||||||||||||||| |||| || || || ||| Sbjct 23582 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCG 23523 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || ||| | |||||||| || ||||| ||||| || || ||||| ||| Sbjct 23522 AGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGG 23463 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCT 118684 || ||||| || || | || | |||||| | ||| Sbjct 23462 ATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 23428 >seq175 Length=68572 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || ||||||||||||||||| |||| || || || ||| Sbjct 14532 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCG 14473 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || ||| | |||||||| || ||||| ||||| || || ||||| ||| Sbjct 14472 AGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGG 14413 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCT 118684 || ||||| || || | || | |||||| | ||| Sbjct 14412 ATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 14378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433822183523368