Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq686 91.5 2e-13 seq1334 87.8 2e-12 seq743 87.8 2e-12 seq71 86.0 7e-12 >seq686 Length=24674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || |||||||| || |||||| || ||| || |||| || || || ||||||||||| Sbjct 10739 TCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAA 10680 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || || ||||| | || | | ||||| || || ||||| |||| | Sbjct 10679 ATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTT 10620 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | || ||||| || || | || || || ||||| || || |||||||| Sbjct 10619 TCGATACTATCAGAAGATTCAACTTCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACG 10560 Query 43173 AAGATTTGCATTTTT 43187 ||||||||||||||| Sbjct 10559 AAGATTTGCATTTTT 10545 >seq1334 Length=5242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 4957 TCTCTTTGGCGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCACT 4898 Query 60125 ATACTACC 60132 |||||||| Sbjct 4897 ATACTACC 4890 >seq743 Length=22455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 4027 CTCTTTGGCGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCACTA 4086 Query 60126 TACTACCGAGGAT 60138 ||||||| | ||| Sbjct 4087 TACTACCAAAGAT 4099 >seq71 Length=102704 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| ||| || ||| || | || || || || |||||||| || Sbjct 21516 TCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCCTCAAGTTGTTTACCAGCAAAG 21575 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||| ||| ||||| | || | | |||||||| || ||||| |||| | Sbjct 21576 ATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTT 21635 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | || ||||| || || | || || || ||||| || || |||||||| Sbjct 21636 TCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCTTGCCGGTAAGAGTCTTTACG 21695 Query 43173 AAGATTTGCATTTTT 43187 ||||||||||||||| Sbjct 21696 AAGATTTGCATTTTT 21710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571806492443120